Annotations for a list of transcripts

[Guy Perry]

Hi. I'm sorry to bother you, and I'm sure you receive many many emails every day on related issues. I just wanted to find out if it was possible to submit a batch (about 22K) of transcript tags (Ensembl mouse ENSMUST) to obtain a list of annotational terms for each of them. No analysis, just the annotations. I've tried this through DAVID but they use a 3K gene cap.

Best and many thanks,

Guy Perry

--

G. Perry

Assistant Professor
Department of Biology

University of Prince Edward Island

Charlottetown, PE  C1A 4P3

Canada

[Cath Tyner]

Hello Guy,

Thank you for submitting your question to the UCSC Genome Browser regarding options for obtaining annotations for a list of 22k ENSMUST transcript tags.

You can accomplish this using our Table Browser tool

​.​

​Table Browser User Guide

Here is a related question on BIOSTARS which should guide you, note that you can upload a list of identifiers to query:
https://www.biostars.org/p/92939/

If you are new to the UCSC Genome Browser, you might also be interested in some introductory video tutorials about the browser available
from our training page:
http://genome.ucsc.edu/training/index.html
http://www.openhelix.com/ucsc

​You can also search our public mailing list archive for similar previously answered questions.​

​Please feel free to respond to this mailing list if you have further questions!​

Thank you again for your inquiry and for using the UCSC Genome Browser. 

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mail 

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​Enjoy,

Cath
. . .

Cath Tyner

UCSC Genome Browser, Software QA & User Support

UC Santa Cruz Genomics Institute

UCSC Genome Browser

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