Hi Eric,
Thank you for your question about syncing the directories for hg19 and
eboVir3.
Neither hg19 or eboVir3 are expected to have nib files/directories. Nib
files were previously used to store the genomic sequence for some
assemblies but have since been replaced by the 2bit format.
The errors that you were seeing were likely due to the fact that the
script was attempting to rsync the nib directories for these assemblies
when they didn't have one. One of our engineers has fixed up the script
so that you shouldn't see these errors anymore.
I hope this is helpful. If you have any further questions, please reply
to
genome...@soe.ucsc.edu. All messages sent to that address are
archived on a publicly-accessible Google Groups forum. If your question
includes sensitive data, you may send it instead to
genom...@soe.ucsc.edu.
Matthew Speir
UCSC Genome Bioinformatics Group