Question about result after Blatsearch query
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Philippe Monget
May 4, 2017, 11:10:12 AM5/4/17
to gen...@soe.ucsc.edu, genome...@soe.ucsc.edu, Cath Tyner, genom...@soe.ucsc.ed, Megane Bregeon, Sophie Fouchecourt
Hi everybody,
Several months ago, when I submitted a protein sequence against the
genome by using Blat search, I obtained the alignment with the
exon/intron borders, and always with 100 bp upstream the sequence, so
that I could retrieve a promoter sequence by repeating at least ten
times (to obtain 1000bp upstream). Now I do not find how to do that...
Could you tell me if it is always possible?
Thank you very much for your question and your help.
Best regards,
Philippe
Several months ago, when I submitted a protein sequence against the
genome by using Blat search, I obtained the alignment with the
exon/intron borders, and always with 100 bp upstream the sequence, so
that I could retrieve a promoter sequence by repeating at least ten
times (to obtain 1000bp upstream). Now I do not find how to do that...
Could you tell me if it is always possible?
Thank you very much for your question and your help.
Best regards,
Philippe
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