v330 Genome Browser Available

[Galt Barber]

Good Morning Genome Browser Mirror Site Operators:

The version v330 source is now available at:
       http://hgdownload.soe.ucsc.edu/admin/jksrc.zip

or labelled with source number:
       http://hgdownload.soe.ucsc.edu/admin/jksrc.v330.zip
<http://hgdownload.soe.ucsc.edu/admin/jksrc.v330.zip>

The version v330 CGI binaries can be found at:
   rsync -avP rsync://hgdownload.cse.ucsc.edu/cgi-bin/ ${WEBROOT}/cgi-bin/
or: ftp://hgdownload.cse.ucsc.edu/apache/cgi-bin/

A license is required for commercial download and/or installation of
the Genome Browser binaries and source code. No license is needed for
academic, nonprofit, and personal use.

*****
NOTE: The genome browser system can now be obtained in a Virtual Box VM
***** image from the 'Genome Store':
      https://genome-store.ucsc.edu/
      See also: http://genome.ucsc.edu/goldenPath/help/gbib.html

Summaries of changes for this version update can be found here:
      http://genecats.soe.ucsc.edu/builds/versions.html

The following CGIs were updated:

cartDump cartReset das hgApi hgBlat hgConvert hgCustom hgEncodeApi
hgEncodeDataVersions hgEncodeVocab hgFileSearch hgFileUi hgGateway hgGene
hgGenome hgHubConnect hgIntegrator hgLiftOver hgLogin hgMenubar hgMirror
hgNear hgPal hgPcr hgRenderTracks hgSession hgSuggest hgTables hgTrackUi
hgTracks hgUserSuggestion hgVai hgVisiGene hgc lsSnpPdbChimera.py phyloGif

(note: new binaries with:
    release v317: hgIntegrator June 2015,
    release v318: hgMenubar June 2015)

  and these configuration files:

/usr/local/apache/cgi-bin/all.joiner
/usr/local/apache/cgi-bin/encode/cv.ra
/usr/local/apache/cgi-bin/extTools.ra
/usr/local/apache/cgi-bin/greatData/*
/usr/local/apache/cgi-bin/hgCgiData/*
/usr/local/apache/cgi-bin/hgGeneData/*
/usr/local/apache/cgi-bin/hgNearData/*
/usr/local/apache/cgi-bin/hgcData/*
/usr/local/apache/cgi-bin/loader/*
/usr/local/apache/cgi-bin/visiGeneData/*

(note: new configuration file: release v323: extTools.ra October 2015,
       updated encode/cv.ra file release v326 December 2015)

Please rsync --delete these directories:

/usr/local/apache/htdocs/js/*
/usr/local/apache/htdocs/style/*

The script in the source tree: src/product/scripts/updateHtml.sh
can be used to update your htdocs directory with the correct delete
operation on /js/ and /style/ directories.

A new hgcentral.sql file is now available at:
   http://hgdownload.cse.ucsc.edu/admin/

If you have any questions or concerns, please feel free to write back
to this genome-mirror mail list.

Galt

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