Reg - Error on danRer10 genome installation.

[Vishweshwaran Sridhar]

Hi,

   I recently loaded danRer10 genome in UCSC mirror. I am getting the following error after completing the installation steps.

I also checked the background tables in danRer10 database and there is not table named gbCdnainfo. Is the database pointed out correctly. Or did I miss anything.

Please help.

Regards

Vishwesh

[Christopher Lee]

Hi Vishwesh,

Thank you for your question about the missing gbCdnaInfo table on the
danRer10 assembly. Are you running the most recent version of the
source code (v349)? Old versions of the code looked in assembly
specific databases for the gbCdnaInfo table, but newer versions of the
code look into the hgFixed database for the gbCdnaInfo table. If you
update your CGI's to the newest version, and download the gbCdnaInfo
table (and maybe the other metadata tables) for the hgFixed database
your problem should be resolved.

Please see this previously answered question for more information:
https://groups.google.com/a/soe.ucsc.edu/d/msg/genome-mirror/0BrbWjFhhXA/UId0zCNqBAAJ

and the announcement of moving these metadata tables to the hgFixed database:
https://groups.google.com/a/soe.ucsc.edu/d/msg/genome-mirror/0FqIlQKi0Is/IBrrJp28BAAJ

Thank you again for your inquiry and using the UCSC Genome Browser. If
you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a
publicly-accessible forum. If your question includes sensitive data,
you may send it instead to genom...@soe.ucsc.edu.

Christopher Lee
UCSC Genomics Institute

On Wed, May 24, 2017 at 2:07 AM, Vishweshwaran Sridhar
<vishweshwa...@gmail.com> wrote:
> Hi,
> I recently loaded danRer10 genome in UCSC mirror. I am getting the
> following error after completing the installation steps.
>
>
>

> I also checked the background tables in danRer10 database and there is not
> table named gbCdnainfo. Is the database pointed out correctly. Or did I miss
> anything.
> Please help.
>
> Regards
> Vishwesh
>

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