Error on home - page amd genome - page (with pictures)

[Claes Matthias]

Dear,

I'm mirroring your genome browser site by using following commands (from https://groups.google.com/a/soe.ucsc.edu/forum/#!search/v348/genome-mirror/6NvWNTZGZPM/bkbL2uH-AwAJ):

rsync -avP rsync://hgdownload.soe.ucsc.edu/cgi-bin/ ${WEBROOT}/cgi-bin/
and

rsync -avP rsync://hgdownload.soe.ucsc.edu/htdocs/ ${WEBROOT}/cgi-bin/

Does anybody have any idea what may cause these errors?

And if it will have any influence on the working of the mirrored site?

Greatly appreciated if someone could help me with my problem.

Kind regards,

Matthias Claes

[Chris Villarreal]

Dear Matthias,

Thank you for your question about the UCSC Genome Browser. It appears you have an error with your r-sync command: rsync -avP rsync://hgdownload.soe.ucsc.edu/htdocs/ ${WEBROOT}/cgi-bin/ "cgi-bin" should be "htdocs" here. 

rsync -avP rsync://hgdownload.soe.ucsc.edu/htdocs/ ${WEBROOT}/htdocs/

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

-Chris V

UCSC Genome Browser

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[Chris Villarreal]

Dear Matthias Claes,

You may have a problem with your hg.conf. First, make sure the files in your hg.conf are in the right place:
grep 'hgGateway.dbDbTaxonomy' /usr/local/apache/cgi-bin/hg.conf

Which should return hgGateway.dbDbTaxonomy=../js/dbDbTaxonomy.js. If this is not the case make the change in your hg.conf. Here is a similar Mailing List question, you will want to look at step number two. If this does not fix the problem please let us know and we can troubleshoot further.

You may find it easier to use our GBiC script (Genome Browser in the Cloud) from the "Genome Store.": https://genome-store.ucsc.edu/ Here is a help "page": https://genome.ucsc.edu/goldenpath/help/gbic.html you may find useful. 

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

-Chris V
UCSC Genome Browser

On Tue, May 23, 2017 at 8:03 AM, Claes Matthias <matthia...@student.howest.be> wrote:

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