CPTAC Cancer Proteomics Data now available in the Genome Browser

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Luvina Guruvadoo

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Jan 7, 2015, 1:37:16 PM1/7/15

to genome-...@soe.ucsc.edu

Hello All,

We are pleased to announce that data from the National Cancer Institute’s (NCI) Clinical Proteomic Tumor Analysis Consortium (CPTAC) is now available in the UCSC Genome Browser as a public track hub for the human hg19 assembly. This track hub contains peptides that were identified by CPTAC in their deep mass spectrometry based characterization of the proteome content of breast, colorectal and ovarian cancer biospecimens that were initially sequenced by The Cancer Genome Atlas. This effort extends the accessibility of CPTAC data to more researchers and provides an additional level of analysis to assist the cancer biology community.

To access and view this hub, navigate to the Track Hub gateway page and select “CPTAC Hub v1” from the Public Hubs list. To view an example browser session showing CPTAC data at the PCNA gene locus, click here. Please direct any queries to the Fenyo Lab at in...@fenyolab.org.

Cheers,

- - -
Luvina Guruvadoo
UCSC Genome Bioinformatics Group

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