New GTEx RNA-seq Signal Hub available!

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Parisa Nejad

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Jun 6, 2016, 1:13:57 AM6/6/16

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Hello everyone,

The GTEx RNA-seq Signal Hub provides data that shows RNA-seq read coverage signal graphs of GTEx samples in the GTEx midpoint milestone data release. The NIH Genotype-Tissue Expression (GTEX) project was designed to establish a sample and data resource for studies on the relationship among genetic variation and gene expression in multiple human tissues. This hub includes a total of 7572 tracks representing samples from 570 adult post-mortem individuals. The GTEx Consortium collected samples from non-diseased donors with ages ranging from 20 to 79. RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center (LDACC) at the Broad Institute. John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab generated sequence read maps and signal files. Data file post-processing and track hub configuration were done by Kate Rosenbloom and Parisa Nejad of the UCSC Genome Browser group.

This hub can be accessed and viewed from the Public Hubs list.

Best,

Parisa Nejad

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