Error While Running Liftover in Docker Image

[Kori_C...@eisai.com]

Hi,

 

We recently purchased Liftover and we are trying to add it to a Docker Image. This Docker Image has a base of databricksruntime/standard:11.3-LTS, which is running Ubuntu 20.04.6 LTS (Focal Fossa) as its Operating System.

 

When I try to run the liftOver executable, I get this error:

/liftOver: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by ./liftOver)

 

 

When I run `ldd –version, I get the following:

 

It looks like GLIBC 2.31 is installed. What is your suggestion for resolving this, should I upgrade the version of GLIBC to 2.32, or use a base image that has GLIBC to 2.32 by default (newer version of Ubuntu)?

 

Best,

Kori Clermont Global R&D Discovery IT - DICE Service Manager 35 Cambridgepark Drive, Cambridge, MA 02140 +1-978-269-4845 - Kori_C...@eisai.com

 

 

[This e-mail message may contain privileged, confidential and/or proprietary information of Eisai. If you believe that it has been sent to you in error, please contact the sender immediately and delete the message including any attachments, without copying, using, or distributing any of the information contained therein. This e-mail message should not be interpreted to include a digital or electronic signature that can be used to authenticate an agreement, contract or other legal document, nor to reflect an intention to be bound to any legally-binding agreement or contract.]

[Luis Nassar]

Hi, Kori.

One of our engineers suggests trying a newer version of Ubuntu.

Databricks 11.3 is no longer in support, and they moved to Ubuntu 22.04 with version 13.3 (they're up to 17 at this point). It should be compatible with 13.3 or later.

You could also try using the liftOver binary from our v479 freeze (https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64.v479/), which may work.

--

---
You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Public Support" group.
To unsubscribe from this group and stop receiving emails from it, send an email to genome+un...@soe.ucsc.edu.
To view this discussion visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome/TYCPR01MB11141E10FA1718FFDC3BBB2FE82EFA%40TYCPR01MB11141.jpnprd01.prod.outlook.com.

--

I hope this is helpful. Please include gen...@soe.ucsc.edu in any replies to ensure visibility by the team. All messages sent to that address are archived on our public forum. If your question includes sensitive information, you may send it instead to genom...@soe.ucsc.edu.

Lou Nassar
UCSC Genomics Institute