Hello,
I came across this resource on your site:
http://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/UShER_SARS-CoV-2//
I’m interested in blending the metadata for those sequences into this dataviz project – a volunteer effort to try to present data on this important topic to a non-technical audience:
https://github.com/Mike-Honey/covid-19-genomes#readme
It’s been quite straightforward to download and ingest your data – thank you for that.
But now I examine it, its seems the data for most countries is out-of-date (besides, US, UK and Bangladesh). For example via outbreak.info etc I can get sequencing stats for Australia up to late June. But in your metadata file it seems the latest available is October 2020?
Thanks
Mike Honey
Technical Lead
Manga Solutions
Mobile: +61 412 235 469
E-mail: mike....@mangasolutions.com
Web: www.mangasolutions.com
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Hi Brian,
Thanks for the reply, that all makes sense to me and was very useful info.
I will try and encourage the Australian contributors to continue – I think fully open repositories are best and should be supported. It looks like Seeman,T is currently an A/Prof at a university that is a client of mine, so I’ll try to encourage him to continue.
https://findanexpert.unimelb.edu.au/profile/704966-torsten-seemann
Regards
Mike