Hello,
Thank you for using the UCSC Genome Browser and sending your inquiry.
From the associated study, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773648/, the data
was aligned to the hg19 assembly. To load the file onto the UCSC Genome Browser, you will have
to do a bit of scripting to get the file into the BED format for a custom track. You can run the
following command:
Which will produce an output like the following:
You will then have to remove the first line from the output or add a # to signify that it is a header
line. You can find an example of the BED file you can load on hg19 here:
https://hgwdev.gi.ucsc.edu/~jairo/MLQ/27884/GSE90550_AHR-only_bound_peaks.bed
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Jairo Navarro
UCSC Genome Browser
Want to share the Browser with colleagues?
Host a workshop: https://bit.ly/ucscTraining
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Mari Grange
University of California, San Francisco
513 Parnassus Avenue
San Francisco, CA 94143
HSW860
Matthew Speir
UCSC Cell Browser, Quality Assurance and Data Wrangler
Human Cell Atlas, User Experience Researcher
UCSC Genome Browser, User Support
UC Santa Cruz Genomics Institute
Revealing life’s code.
To view this discussion on the web visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome/BY3PR05MB7905DC70CC0BD4047DDA687B82E99%40BY3PR05MB7905.namprd05.prod.outlook.com.