liftover between sheep assemblies

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Pam Wiener

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Apr 3, 2024, 12:11:36 PM4/3/24
to gen...@soe.ucsc.edu

Dear UCSC Genome Browser

 

Regarding the online liftover function: is there any possibility that you will add the latest sheep assembly (ARS-UI_Ramb_v2.0) onto the browser so that liftover can be performed between this and the previous one (Oar_v4.0) that is currently on your system?

 

Many thanks

Pam

 

Pam Wiener

The Roslin Institute and Royal (Dick) School of Veterinary Studies

University of Edinburgh

Easter Bush, Midlothian

EH25 9RG

United Kingdom

 

phone: 44 (0) 131 651 9248

email: pam.w...@roslin.ed.ac.uk

 

“The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336

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Jairo Navarro Gonzalez

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Apr 3, 2024, 7:10:28 PM4/3/24
to Pam Wiener, gen...@soe.ucsc.edu

Hello,

Thank you for using the UCSC Genome Browser and sending your inquiry.

You can find the liftOver files available on the download server:

oviAri4 to ARS-UI_Ramb_v2.0:

https://hgdownload.soe.ucsc.edu/goldenPath/oviAri4/liftOver/oviAri4ToGCF_016772045.1.over.chain.gz

ARS-UI_Ramb_v2.0 to oviAri4:

https://hgdownload.soe.ucsc.edu/hubs/GCF/016/772/045/GCF_016772045.1/liftOver/GCF_016772045.1ToOviAri4.over.chain.gz

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
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If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Jairo Navarro
UCSC Genome Browser


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