Quickly identifying known mutations sanger sequencing
Iida, Megan
Hi all,
Does anyone know of a tool/program that is available that will help us to quickly identify if our mutations (found by sanger sequencing) are known SNPs without having to manually zoom in and check to see if they line up?
Best,
Allen and Megan
Jairo Navarro Gonzalez
Hello Allen and Megan,
Thank you for using the UCSC Genome Browser and your inquiry.
You may find the following tools useful, the Variant Annotation Integrator and the Data Integrator.
Variant Annotation Integrator:
The Variant Annotation Integrator (VAI) is a research tool for associating annotations from the UCSC database with your uploaded set of variant calls.
Data Integrator:
The Data Integrator finds items in different tracks that overlap by position, and unlike the Table Browser's intersection function, the Data Integrator can output all fields from all selected tracks. Up to 5 different tracks may be queried at a time.
You may also find our mailing list archives useful to find other previously answered questions regarding these tools.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu.
All messages sent to that address are archived on a publicly-accessible Google Groups forum.
If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Jairo Navarro
UCSC Genomics Institute
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