Request help regarding the chain file

[lixinmei]

Dear supports,

I am very grateful for your previous assistance, which has provided tremendous support to my work.

 I would like to ask for your help again to get the chain files of these species and people . The specific files that were not created are as follows:

-Bac_camel(GCF_000767855.1) to cattle (GCF_002263795.3)

-wildyak(GCF_027580195.1) to  cattle (GCF_002263795.3) 
- goat(GCF_001704415.2) to  cattle (GCF_002263795.3)  
- sheep(GCF_016772045.2)  to  cattle (GCF_002263795.3)   
 -reddeer (GCF_910594005.1)  to  cattle (GCF_002263795.3)    
 -pig(GCF_000003025.6)  to  cattle (GCF_002263795.3)     
 -horse(GCF_002863925.1)  to  cattle (GCF_002263795.3)      
 -dog(GCF_011100685.1)   to  cattle (GCF_002263795.3)      
-mouse(GCF_000001635.27)  to  cattle (GCF_002263795.3)     
-GCF_028583685.1 to  cattle (GCF_002263795.3)   
-rabbit (GCF_964237555.1)  to  cattle (GCF_002263795.3)   
-hedgehog(GCF_950295315.1)    to  cattle (GCF_002263795.3)   

Thank you very much for your time and assistance.

xinmei

	lixinmei
Northwest A& F University lixinm...@163.com

[Gerardo Perez]

Hello, Xinmei.

Thank you for your interest in the Genome Browser.

We are currently running up the liftOver files you requested. Some files are already available for download at the links below:

GCF_000767855.1 (Bactrian camel) -> GCF_002263795.3:: https://hgdownload.soe.ucsc.edu/hubs/GCF/000/767/855/GCF_000767855.1/liftOver/GCF_000767855.1ToGCF_002263795.3.over.chain.gz

GCF_001704415.2 (goat v2 San Clemente 2016) -> GCF_002263795.3: https://hgdownload.soe.ucsc.edu/hubs/GCF/001/704/415/GCF_001704415.2/liftOver/GCF_001704415.2ToGCF_002263795.3.over.chain.gz

GCF_016772045.2 (sheep OAR_USU_Benz2616) -> GCF_002263795.3: https://hgdownload.soe.ucsc.edu/hubs/GCF/016/772/045/GCF_016772045.2/liftOver/GCF_016772045.2ToGCF_002263795.3.over.chain.gz

GCF_000001635.27 (mm39) -> GCF_002263795.3: https://hgdownload.soe.ucsc.edu/goldenPath/mm39/liftOver/mm39ToGCF_002263795.3.over.chain.gz

We will be sure to follow up as soon as the remaining files are ready.

If you have any questions or need further assistance, please feel free to reach out to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute

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[Gerardo Perez]

Hello, Xinmei.

Thank you for your interest in the Genome Browser.

We have made the requested chain files available on our download server:

wildyak (GCF_027580195.1) to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/hubs/GCF/027/580/195/GCF_027580195.1/liftOver/GCF_027580195.1ToGCF_002263795.3.over.chain.gz

pig (GCF_000003025.6 susScr11) to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/goldenPath/susScr11/liftOver/susScr11ToGCF_002263795.3.over.chain.gz

horse (GCF_002863925.1 equCab3) to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/goldenPath/equCab3/liftOver/equCab3ToGCF_002263795.3.over.chain.gz

dog (GCF_011100685.1) to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/hubs/GCF/011/100/685/GCF_011100685.1/liftOver/GCF_011100685.1ToGCF_002263795.3.over.chain.gz

sugar glider (GCF_028583685.1 to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/hubs/GCF/028/583/685/GCF_028583685.1/liftOver/GCF_028583685.1ToGCF_002263795.3.over.chain.gz

rabbit (GCF_964237555.1) to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/hubs/GCF/964/237/555/GCF_964237555.1/liftOver/GCF_964237555.1ToGCF_002263795.3.over.chain.gz

hedgehog (GCF_950295315.1) -to cattle (GCF_002263795.3): https://hgdownload.soe.ucsc.edu/hubs/GCF/950/295/315/GCF_950295315.1/liftOver/GCF_950295315.1ToGCF_002263795.3.over.chain.gz

We are still working on the reddeer (GCF_910594005.1) to cattle (GCF_002263795.3) liftOver chain file and will follow up when this file is ready.

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute