RTG Core 3.8.4 / RTG Tools 3.8.4

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.8.4 The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.

We have also produced updated builds of our utilities package, RTG Tools 3.8.4 which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.8.4 (2017-09-08)

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This release primarily includes bugfixes and minor improvements:

* vcfeval: Explicitly warn when the ROC score field does not exist in

  the VCF header, to help in cases where the user has mixed up INFO vs

  FORMAT field names.

* vcfeval: Fix an exception that could occur when processing VCFs with

  GT ploidy >= 3.

* format: When formatting FASTA (both DNA and protein), suppress

  warnings about "unexpected symbols" produced by genuine IUPAC

  ambiguity codes.

* misc: Detect invalid VCF records containing duplicate INFO or FORMAT

  fields.

* misc: Improved detection of invalid REF/ALT fields in input VCF files,

  allowing clearer exception messages.

* misc: Fix incorrect detection of network stats capability during local

  run monitoring.

* misc: Bash command completion now also works if rtg is symlinked as

  rtg-tools or rtg-core, to improve convenience when both are

  installed. (See the bash completion script if you have alternative

  RTG executable names for which you want to enable the completion)