RTG Core 3.7.1 / RTG Tools 3.7.1

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.7.1. The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.

We have also produced updated builds of our utilities package, RTG Tools 3.7.1, which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.7.1 (2016-10-18)

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This release primarily includes bugfixes and minor improvements:

* map/cgmap: Addresses a pathological case where a particular paired-end

  read pair plus reference sequence could run for a disproportionately

  long time in highly repetitive regions.

* vcfeval: Fixes a rare exception that could occur when a "too-hard"

  region occurs right at the end of a reference sequence.

* rocplot: Fixes an exception that would occur when trying to plot the

  result of evaluating a call set (containing variants) against a

  baseline containing no variants.

* rocplot: (gui) When loading several files on startup, sometimes the

  initial view would not be fully zoomed out.  We now ensure that the

  plot is zoomed out after the initial files are loaded.

* vcffilter: Fixes a regression in command line flag validation that

  would cause a talkback exception if no input file was supplied rather

  than presenting an appropriate message.

* vcfmerge: Fixes an exception that could occur when merging a mixture

  of regular VCFs containing sample columns with sites-only VCFs.

* bgzip: Fixes an exception that could occur when decompressing from

  stdin.

* Minor documentation fixes.