RTG Core 3.5.2 / RTG Tools 3.5.2

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.5.2. The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core. 

We have also produced updated builds of our utilities package, RTG Tools 3.5.2, which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.5.2 (2015-10-15)

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This release primarily includes bugfixes and minor improvements:

* many: When piping results from one command to another, and a later

  command closes the pipe (e.g. head), this scenario no longer

  produces an "Broken pipe" error message. This is consistent with the

  behaviour of commonly used command-line tools.

* rocplot: Updated to handle ROC data files that contain lines with

  non-numeric score field. (In particular, future versions of vcfeval

  will include additional data-points corresponding to variants with

  no score provided)

* rocplot: (GUI) Improvement to usability for curve renaming. Now a

  single-click in the curve title area enters edit mode, with

  RETURN/TAB to accept, ESC to cancel.

* rocplot: (GUI) Add a button that prints an equivalent command line

  to the terminal, for easy restarting with similar state,

  particularly if curves files have been added interactively..

* cgmap: Fix for sample sex being ignored when supplied via a pedigree

  file rather than using explicit sex flag.

* misc: Removed vestigial (and in RTG Tools' case, incorrect)

  "Licensed to:" line from the version command output.

* misc: Add BSD license text to the RTG Tools distributable zip.