RTG Core 3.6.1 / RTG Tools 3.6.1

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.6.1. The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.

We have also produced updated builds of our utilities package, RTG Tools 3.6.1, which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.6.1 (2016-01-25)

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This release primarily includes bugfixes and minor improvements:

* coverage: Fixed an exception that could occur when supplying a

  reference SDF that did not contain all the sequences present in the

  alignments.

* family: Fixed an exception that could occur when supplying a family

  pedigree involving members not present in the input mappings.

* population: The COF/COC annotations for de novo calls that were

  recently added to the family caller are now also produced by the

  population command when appropriate.

* map/cgmap: When mapping pre-formatted reads containing SAM read

  group information embedded in the SDF and the input format was

  explicitly specified as SDF via -F sdf, the read group info wasn't

  being picked up. This is now fixed.

* vcfmerge: Speed improvement when merging VCF files containing a

  large number of contig header declarations.

* many: Speed improvement when accessing indexed datafiles

  (e.g. BED/BAM/VCF) that were being filtered by very large sets of

  regions.

* rocplot: Better error handling when trying to run the GUI on a

  machine where a graphics environment is unavailable.

* rocplot: (GUI) Update frame title when graph title changes.