RTG Core 3.4.3 / RTG Tools 3.4.3

[RTG Announcements]

New stable releases are now available which include bug fixes as well as improvements to documentation and error handling, so users should update to the new release.  

The first of these is our full analysis suite, RTG Core 3.4.3. The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source on github. 

We have also produced updated builds of our utilities package, RTG Tools 3.4.3, which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools

RTG Core 3.4.3 (2015-03-19)

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This is primarily a bugfix release:

* map: Fixed a crash that could occur when mapping without any sample

  sex specified but when using a reference genome containing

  chromosome sex information.

* somatic: Fixed a rare crash that could occur when calling across

  blocks of Ns when the only hypothesis presented by the reads was a

  deletion of sufficient length.

* vcfeval: Improved handling in situations where variants are so dense

  within a region that there are too many possible haplotypes to

  feasibly resolve. Previously operation would abort, now a warning is

  issued and both baseline and called variants within that region are

  ignored.