RTG Core 3.6.2 / RTG Tools 3.6.2

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.6.2. The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.

We have also produced updated builds of our utilities package, RTG Tools 3.6.2, which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.6.2 (2016-03-10)

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This release primarily includes bugfixes and minor improvements:

* map: mapping very large numbers of reads in a single chunk or with

  low step size settings could exceed some internal datastructures,

  giving unpredictable results. An explicit check for these conditions

  has been added.

* map: Reduction in peak memory use when mapping paired-end data.

* vcfeval: Better error handling for variants which have triploid or

  higher GT (ploidy higher than 2 is not supported).

* extract: Extracting multiple regions from SAM/BAM across different

  chromosomes could cause an exception.

* rocplot: Improved error handling for yet more ways in which

  attempting to open a GUI from a headless server can fail.

* rocplot: (GUI) Minor improvement to crosshair handling.