RTG Core 3.9.1 / RTG Tools 3.9.1

[RTG Announcements]

New stable releases are now available which include minor improvements and bug fixes.

The first of these is our full analysis suite, RTG Core 3.9.1 The changes in this version are listed below.  Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.

We have also produced updated builds of our utilities package, RTG Tools 3.9.1 which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.

RTG Core 3.9.1 (2018-05-29)
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This release primarily includes bugfixes and minor improvements:

* map: Fix a rare circumstance where mapping using a reference based
  hash blacklist would use significantly more memory than required.

* vcffilter: JavaScript functions can test for the version of RTG they
  are running under (for checking minimum required version for feature
  compatibility) via a call of the form: "checkMinVersion('3.9.2')"

* vcffilter: JavaScript now supports writing of ID, QUAL, and FILTER
  fields. Added function "ensureFilterHeader" that works the same way as
  ensureInfoHeader and ensureFormatHeader for defining new FILTERs.

* coverage: Improve binning when reporting coverage levels for very deep
  (e.g. >10000X) sequencing datasets.

* vcfeval: More graceful handling of a malformed GT in an input VCF.

* many: Fix escaping of description fields when writing VCF header
  lines.