RTG Core 3.10.1 / RTG Tools 3.10.1
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RTG Announcements
Jan 20, 2019, 7:29:47 PM1/20/19
to RTG Announcements
New stable releases are now available which include minor improvements and bug fixes.
The first of these is our full analysis suite, RTG Core 3.10.1 The changes in this version are listed below. Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.
We have also produced updated builds of our utilities package, RTG Tools 3.10.1 which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.
RTG Core 3.10.1 (2019-01-21)
----------------------------
This release primarily includes bugfixes and minor improvements:
* vcfdecompose: Fix a case where extremely long indels could cause an
exception during call decomposition. This also affected vcfeval when
using --decompose.
* demo scripts: Fix the demo script not pausing for the user under newer
versions of bash.
* map: Fix an exception that could be triggered during report generation
when using --all-hits.
* rocplot: (gui) Fix the status bar metrics not showing when the curve
hugs an axis.
* rocplot: Fix a rare exception that would occur during
precision/sensitivity plotting if the input data file contained
redundant initial points.
* vcveval: Initial support for "partial spanning deletion" notation that
octopus uses in some calls.
* vcfmerge: Now allows -f to be a comma-separated list.
* vcfstats: The percent phased genotypes statistic was incorrectly
calculated for call sets using partial genotypes (e.g. ".|1")
* many: VCF header parsing of the INFO/FORMAT Description component was
incorrectly de-escaping additional backslash sequences, which could
result in invalid VCF output.
* readsim: Warn if the user supplied taxonomic distribution make
reference to unusable taxon ids.
The first of these is our full analysis suite, RTG Core 3.10.1 The changes in this version are listed below. Commercial users may download the update from our website at http://realtimegenomics.com/products/rtg-core-downloads. Non-commercial users can download the update from our website at http://realtimegenomics.com/products/rtg-core-non-commercial or build from the updated source code on github at https://github.com/RealTimeGenomics/rtg-core.
We have also produced updated builds of our utilities package, RTG Tools 3.10.1 which is made freely available for non-commercial or commercial use alike. More information and download links are available from our website at http://realtimegenomics.com/products/rtg-tools or build from the updated source on github at https://github.com/RealTimeGenomics/rtg-tools.
RTG Core 3.10.1 (2019-01-21)
----------------------------
This release primarily includes bugfixes and minor improvements:
* vcfdecompose: Fix a case where extremely long indels could cause an
exception during call decomposition. This also affected vcfeval when
using --decompose.
* demo scripts: Fix the demo script not pausing for the user under newer
versions of bash.
* map: Fix an exception that could be triggered during report generation
when using --all-hits.
* rocplot: (gui) Fix the status bar metrics not showing when the curve
hugs an axis.
* rocplot: Fix a rare exception that would occur during
precision/sensitivity plotting if the input data file contained
redundant initial points.
* vcveval: Initial support for "partial spanning deletion" notation that
octopus uses in some calls.
* vcfmerge: Now allows -f to be a comma-separated list.
* vcfstats: The percent phased genotypes statistic was incorrectly
calculated for call sets using partial genotypes (e.g. ".|1")
* many: VCF header parsing of the INFO/FORMAT Description component was
incorrectly de-escaping additional backslash sequences, which could
result in invalid VCF output.
* readsim: Warn if the user supplied taxonomic distribution make
reference to unusable taxon ids.
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