OpenWDL Community

Contact owners and managers

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Welcome to the WDL community mailing list. This is a place to discuss WDL related topics with other members of the community.

Some basic information:

Support questions should be asked support forum.
Check out our governance doc for more explanation of how to handle feature requests
Live chat is available on Gitter

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Patrick Magee

12/14/21

End of Year Update

Hello Everyone, It has been a while since our last community update, and a lot of work has been going

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End of Year Update

Hello Everyone, It has been a while since our last community update, and a lot of work has been going

12/14/21

Jaya Kishore E

8/3/21

Running GATK on an NVIDIA Tesla P6 GPU locally

Friends, Trying to figure out the correct WDL and JSON to run a simple Haplotype caller GATK on a

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Running GATK on an NVIDIA Tesla P6 GPU locally

Friends, Trying to figure out the correct WDL and JSON to run a simple Haplotype caller GATK on a

8/3/21

Patrick Magee

1/13/21

Version 1.1 of WDL Open for Final Vote

Hello Everyone, As many of you know, we have been working towards a 1.1 Version of the WDL

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Version 1.1 of WDL Open for Final Vote

Hello Everyone, As many of you know, we have been working towards a 1.1 Version of the WDL

1/13/21

Mike Lin

11/16/20

Voting Active on PR#365 -- abbreviated syntax for passthrough call inputs

https://github.com/openwdl/wdl/pull/365 This is a small syntactic convenience for calls in workflows

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Voting Active on PR#365 -- abbreviated syntax for passthrough call inputs

https://github.com/openwdl/wdl/pull/365 This is a small syntactic convenience for calls in workflows

11/16/20

Patrick Magee

8/31/20

New PRs Open for Voting and so Many Exciting Updates

Hello Everyone, It has been a while since we last updated the community. however there has been a lot

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New PRs Open for Voting and so Many Exciting Updates

Hello Everyone, It has been a while since we last updated the community. however there has been a lot

8/31/20

Patrick Magee

5/6/20

New PR Open for Voting and Other Announcements

Hello Everyone, There are a number of items I would like to direct your attention to. PRs Waiting for

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New PR Open for Voting and Other Announcements

Hello Everyone, There are a number of items I would like to direct your attention to. PRs Waiting for

5/6/20

Patrick Magee

4/24/20

One new PR Open for Voting

Hello Everyone, I have opened up the following PR for community voting: Added Suffix and similar

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One new PR Open for Voting

Hello Everyone, I have opened up the following PR for community voting: Added Suffix and similar

4/24/20

Patrick Magee

3/30/20

Voting Closed

Hello Everyone, Voting has now closed and both of the following PR's have passed the RFC process!

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Voting Closed

Hello Everyone, Voting has now closed and both of the following PR's have passed the RFC process!

3/30/20

Patrick Magee, Lynn Langit3

3/20/20

Goodbye to Gitter, Hello Slack!

Hello Lynn, My apologies, here is a newer link that should not expire: https://join.slack.com/t/

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Goodbye to Gitter, Hello Slack!

Hello Lynn, My apologies, here is a newer link that should not expire: https://join.slack.com/t/

3/20/20

Patrick Magee

3/17/20

New PRs Available for Voting

Hello Everyone, I wanted to bring your attention to two new PR's that are now available for

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New PRs Available for Voting

Hello Everyone, I wanted to bring your attention to two new PR's that are now available for

3/17/20

Geraldine Van der Auwera

2/7/20

OpenWDL Testathon: February 18-19

Hi everyone, on behalf of the OpenWDL steering committee, I'm excited to announce that we're

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OpenWDL Testathon: February 18-19

Hi everyone, on behalf of the OpenWDL steering committee, I'm excited to announce that we're

2/7/20

Christopher Llanwarne

1/29/20

One(!) new PR open for Voting

Hello everyone, 1. As promised late last week, I am today opening up the following PR for community

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One(!) new PR open for Voting

Hello everyone, 1. As promised late last week, I am today opening up the following PR for community

1/29/20

Patrick Magee, Geraldine Van der Auwera2

1/27/20

Media PR now open and other announcements

Thanks Patrick for spreading the word! I just updated the openwdl.org settings to forward to the new

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Media PR now open and other announcements

Thanks Patrick for spreading the word! I just updated the openwdl.org settings to forward to the new

1/27/20

Christopher Llanwarne

1/24/20

Intention to Open 2 PRs For Voting

Hello Everyone, Conversation on the following two PRs seems to have settled down, so I'll aim to

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Intention to Open 2 PRs For Voting

Hello Everyone, Conversation on the following two PRs seems to have settled down, so I'll aim to

1/24/20

Patrick Magee

11/26/19

New PR Open for Voting

Hello Everyone, I would like to inform you of a new PR that has been open for voting: Permit one-

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New PR Open for Voting

Hello Everyone, I would like to inform you of a new PR that has been open for voting: Permit one-

11/26/19

Mike Lin

11/25/19

miniwdl blog

Dear all, check out our new blog post on the miniwdl beta: https://medium.com/czi-technology/miniwdl-

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miniwdl blog

Dear all, check out our new blog post on the miniwdl beta: https://medium.com/czi-technology/miniwdl-

11/25/19

Patrick Magee, Geraldine Van der Auwera3

11/22/19

New Logos for OpenWDL

I know you just want to make me do work, Jeff. But sure, will do. On Fri, Nov 22, 2019 at 1:36 PM

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New Logos for OpenWDL

I know you just want to make me do work, Jeff. But sure, will do. On Fri, Nov 22, 2019 at 1:36 PM

11/22/19

Patrick Magee

11/20/19

New PRs Available for review

Hello Everyone, There are a number of new PR's available for your review right now - Clarify

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New PRs Available for review

Hello Everyone, There are a number of new PR's available for your review right now - Clarify

11/20/19

Pieter Lukasse, … Jeff Gentry7

11/7/19

WDL or CWL

Hi - Ultimately the decision of whether to use CWL or WDL I think needs to come down to what best

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WDL or CWL

Hi - Ultimately the decision of whether to use CWL or WDL I think needs to come down to what best

11/7/19

Patrick Magee, … Christopher Llanwarne3

10/22/19

Discussion on changes to RFC

Mike - that's awesome news! Congratulations! Pat - I'm also definitely in favor of this. It

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Discussion on changes to RFC

Mike - that's awesome news! Congratulations! Pat - I'm also definitely in favor of this. It

10/22/19

Patrick Magee

8/30/19

New PR open: Global String Interpolation

Hello Everyone, We are pushing towards a new release (2.0 on its way!!) and we are currently waiting

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New PR open: Global String Interpolation

Hello Everyone, We are pushing towards a new release (2.0 on its way!!) and we are currently waiting

8/30/19

Jeff Gentry

8/26/19

WDL 2.0 needs your help

Hi all - Just a reminder that in order for an approved PR to make it into the developmental spec that

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WDL 2.0 needs your help

Hi all - Just a reminder that in order for an approved PR to make it into the developmental spec that

8/26/19

Patrick Magee

8/8/19

New PRs open for voting

Hello Everyone, There are a few new PR's which I have opened up for voting. Please take a look

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New PRs open for voting

Hello Everyone, There are a few new PR's which I have opened up for voting. Please take a look

8/8/19

Patrick Magee

8/8/19

Voting Ending Tomorrow

Hello Everyone, I would just like to draw your attention to a PR whose voting is ending tomorrow.

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Voting Ending Tomorrow

Hello Everyone, I would just like to draw your attention to a PR whose voting is ending tomorrow.

8/8/19

Mike Lin, … Patrick Magee3

7/30/19

miniwdl v0.3.0 workflow runner

This is absolutely fantastic news. MiniWDL seems to be driving development of a number of tools which

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miniwdl v0.3.0 workflow runner

This is absolutely fantastic news. MiniWDL seems to be driving development of a number of tools which

7/30/19

Patrick Magee

7/25/19

PR Open For Voting

Hello Everyone, I would like to bring to your attention to a PR that is now open for voting:

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PR Open For Voting

Hello Everyone, I would like to bring to your attention to a PR that is now open for voting:

7/25/19

Patrick Magee, … Geraldine Van der Auwera4

7/9/19

Some PR's To review

LGTM too On Tue, Jul 9, 2019 at 5:24 PM Ohad Rodeh <oro...@dnanexus.com> wrote: They all look

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Some PR's To review

LGTM too On Tue, Jul 9, 2019 at 5:24 PM Ohad Rodeh <oro...@dnanexus.com> wrote: They all look

7/9/19

Jeff Gentry

6/12/19

Voting active: input clarification

Hi all - The PR I mentioned yesterday is open for voting: https://github.com/openwdl/wdl/pull/314

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Voting active: input clarification

Hi all - The PR I mentioned yesterday is open for voting: https://github.com/openwdl/wdl/pull/314

6/12/19

Jeff Gentry

6/11/19

PR: clarification of input format

Hi all - There's been discussion in a handful of PRs & such regarding format of inputs -

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PR: clarification of input format

Hi all - There's been discussion in a handful of PRs & such regarding format of inputs -

6/11/19

Patrick Magee

5/31/19

New PR Open: HINTS!

Hello Everyone, I would like to direct your attention to a new major PR that has opened which hopes

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New PR Open: HINTS!

Hello Everyone, I would like to direct your attention to a new major PR that has opened which hopes

5/31/19