It's an MMCX connector footprint, not an RP-SMA. The height of an MMCX
connector plus a right-angle cable connector is short enough to clear
most shields, and you can run the cable out to an external antenna.
See http://www.digikey.com/product-detail/en/CONMMCX001/CONMMCX001-ND/1277204
and http://www.digikey.com/product-detail/en/WCP2400-MMCX4/994-1079-ND/2392258.
The charging circuit is designed to handle a single Li-Poly cell. For
example, I often use this battery from Sparkfun:
https://www.sparkfun.com/products/341
I am considering pulling the antenna out to the edge of the board for
the r3 version (still quite a ways out) and placing the MMCX footprint
such that you can install a right-angle connector pointed off the end
of the board.