singularity inside docker under macOS

[Michał T. Lorenc]

Hi

I am using a Mac and I found docker container which contains Singularity. Unfortunately, I am not able to build a Singularity container with it.

$ docker run --rm -it --privileged -v $(pwd):/work deephorizons/singularity sh
Unable to find image 'deephorizons/singularity:latest' locally
latest: Pulling from deephorizons/singularity
124c757242f8: Pull complete
9d866f8bde2a: Pull complete
fa3f2f277e67: Pull complete
398d32b153e8: Pull complete
afde35469481: Pull complete
7584e4eaacba: Pull complete
5936462213ac: Pull complete
Digest: sha256:7c61f7fc2e86934c1c500965d38b8915242979167f01d7b05d4383b3154923ad
Status: Downloaded newer image for deephorizons/singularity:latest
# singularity create 3d-dna.img
WARNING: The create command is deprecated, and will be removed
WARNING: To create, use the image.create command.
WARNING: Use the build command to create and build an image in a single step.
Creating empty 768MiB image file: 3d-dna.img
Formatting image with ext3 file system
Image is done: 3d-dna.img
# singularity bootstrap 3d-dna.img Singulairty
WARNING: The bootstrap command is deprecated and will be removed in a future release.
WARNING: Use the build command like so:
WARNING: singularity build 3d-dna.img Singulairty
Building into existing container: 3d-dna.img
ERROR: Unknown container build Singularity recipe format: Singulairty
ABORT: Aborting with RETVAL=255
Cleaning up...
#    

What did I miss?

Thank you in advance,

Michal

[Ryo Nakamaru]

Hi Michal,

According to your Dockerfile (
https://hub.docker.com/r/deephorizons/singularity/~/dockerfile/ ), I
think you have to do `cd /work` first or run a container with `-w
/work` option. You're might in a wrong working directory.

Nak

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[Michał T. Lorenc]

Hi Nak,

Now, I used cd /work but I still got the same problem.

What did I miss?

Thank you in advance,

Best wishes,

Michal

[Jafaruddin Lie]

"# singularity bootstrap 3d-dna.img Singulairty
WARNING: The bootstrap command is deprecated and will be removed in a future release.
WARNING: Use the build command like so:
WARNING: singularity build 3d-dna.img Singulairty
Building into existing container: 3d-dna.img
ERROR: Unknown container build Singularity recipe format: Singulairty
ABORT: Aborting with RETVAL=255
Cleaning up... " 

Is that a typo in your bootstrap command? You're trying to bootstrap a file called `Singulairty` instead of Singularity?

[Michał T. Lorenc]

Thank you. Yes, it was a typo now it works.

Michal

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