Thomas Hartmann
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to singularity, Christian Voss
Hi all,
we see an odd issue, where a container seems not to be portable between
hosts.
The container is based on FC34 (tried CentOS7 as well) and only the
nextcloud-client is installed from the default repos. The builds seem
unssupicious on various hosts.
On my FC34 laptop, I can run the application without problems when
shelling into the resulting container image [1].
However, when trying the same on other hosts (CentOS7 etc.), the
application throws an error about missing its QT5 shared libraries [2]?!
Which is (nominally) nonsense as the library is present in the
container's namespace [2.b] and envvars are set in the instances paths.
Comparing the linked libraries [3] actually shows, that in the instance
on a CentOS7 host the library is actually not found - where on the same
container image on FC34 it is found/linked.
Maybe somebody has an idea what could be causing this strange behaviour?
Cheers and thanks,
Thomas
[1]
> singularity --version
singularity version 3.8.5-2.fc34
> singularity shell --containall nc.d/
Singularity> nextcloudcmd --help
nextcloudcmd - command line Nextcloud client tool
Usage: nextcloudcmd [OPTION] <source_dir> <server_url>
...
[2]
> singularity --version
singularity version 3.8.5-2.el7
> singularity shell --containall nc.d/
Singularity> nextcloudcmd --help
nextcloudcmd: error while loading shared libraries: libQt5Core.so.5:
cannot open shared object file: No such file or directory
[2.b]
Singularity> ls /usr/lib*/libQt5Core.so.5
/usr/lib64/libQt5Core.so.5
[3]
> sdiff /tmp/fc34.ldd.sort /tmp/co7.ldd.sort
/lib64/ld-linux-x86-64.so.2 (0x00007fae5db73000) |
/lib64/ld-linux-x86-64.so.2 (0x00007f6a1c4a9000)
libbrotlicommon.so.1 => /usr/lib64/libbrotlicommon.so |
libbrotlicommon.so.1 => /usr/lib64/libbrotlicommon.so
libbrotlidec.so.1 => /usr/lib64/libbrotlidec.so.1 (0x |
libbrotlidec.so.1 => /usr/lib64/libbrotlidec.so.1 (0x
libbz2.so.1 => /usr/lib64/libbz2.so.1 (0x00007fae58b9 | libbz2.so.1 =>
/usr/lib64/libbz2.so.1 (0x00007f6a19e4
libcap.so.2 => /usr/lib64/libcap.so.2 (0x00007fae5ad1 | libcap.so.2 =>
/usr/lib64/libcap.so.2 (0x00007f6a19c4
libcom_err.so.2 => /usr/lib64/libcom_err.so.2 (0x0000 |
libcom_err.so.2 => /usr/lib64/libcom_err.so.2 (0x0000
libcrypto.so.1.1 => /usr/lib64/libcrypto.so.1.1 (0x00 |
libcrypto.so.1.1 => /usr/lib64/libcrypto.so.1.1 (0x00
libc.so.6 => /usr/lib64/libc.so.6 (0x00007fae5cdf5000 | libc.so.6 =>
/usr/lib64/libc.so.6 (0x00007f6a1bcae000
libdbus-1.so.3 => /usr/lib64/libdbus-1.so.3 (0x00007f | libdbus-1.so.3
=> /usr/lib64/libdbus-1.so.3 (0x00007f
libdl.so.2 => /usr/lib64/libdl.so.2 (0x00007fae5bb870 | libdl.so.2 =>
/usr/lib64/libdl.so.2 (0x00007f6a1aa3e0
libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00 |
libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00
libgcc_s.so.1 => /usr/lib64/libgcc_s.so.1 (0x00007fae | libgcc_s.so.1
=> /usr/lib64/libgcc_s.so.1 (0x00007f6a
libgcrypt.so.20 => /usr/lib64/libgcrypt.so.20 (0x0000 |
libgcrypt.so.20 => /usr/lib64/libgcrypt.so.20 (0x0000
libGLdispatch.so.0 => /usr/lib64/libGLdispatch.so.0 ( |
libGLdispatch.so.0 => /usr/lib64/libGLdispatch.so.0 (
libglib-2.0.so.0 => /usr/lib64/libglib-2.0.so.0 (0x00 |
libglib-2.0.so.0 => /usr/lib64/libglib-2.0.so.0 (0x00
libGL.so.1 => /usr/lib64/libGL.so.1 (0x00007fae5b0ad0 | libGL.so.1 =>
/usr/lib64/libGL.so.1 (0x00007f6a1a5aa0
libGLX.so.0 => /usr/lib64/libGLX.so.0 (0x00007fae58f9 | libGLX.so.0 =>
/usr/lib64/libGLX.so.0 (0x00007f6a1a27
libgpg-error.so.0 => /usr/lib64/libgpg-error.so.0 (0x |
libgpg-error.so.0 => /usr/lib64/libgpg-error.so.0 (0x
libgraphite2.so.3 => /usr/lib64/libgraphite2.so.3 (0x |
libgraphite2.so.3 => /usr/lib64/libgraphite2.so.3 (0x
libgssapi_krb5.so.2 => /usr/lib64/libgssapi_krb5.so.2 |
libgssapi_krb5.so.2 => /usr/lib64/libgssapi_krb5.so.2
libharfbuzz.so.0 => /usr/lib64/libharfbuzz.so.0 (0x00 |
libharfbuzz.so.0 => /usr/lib64/libharfbuzz.so.0 (0x00
libicudata.so.67 => /usr/lib64/libicudata.so.67 (0x00 |
libk5crypto.so.3 => /usr/lib64/libk5crypto.so.3 (0x00
libicui18n.so.67 => /usr/lib64/libicui18n.so.67 (0x00 |
libkeyutils.so.1 => /usr/lib64/libkeyutils.so.1 (0x00
libicuuc.so.67 => /usr/lib64/libicuuc.so.67 (0x00007f | libkrb5.so.3
=> /usr/lib64/libkrb5.so.3 (0x00007f6a1a
libk5crypto.so.3 => /usr/lib64/libk5crypto.so.3 (0x00 |
libkrb5support.so.0 => /usr/lib64/libkrb5support.so.0
libkeyutils.so.1 => /usr/lib64/libkeyutils.so.1 (0x00 | liblz4.so.1 =>
/usr/lib64/liblz4.so.1 (0x00007f6a19c4
libkrb5.so.3 => /usr/lib64/libkrb5.so.3 (0x00007fae5a | liblzma.so.5
=> /usr/lib64/liblzma.so.5 (0x00007f6a19
libkrb5support.so.0 => /usr/lib64/libkrb5support.so.0 | libm.so.6 =>
/usr/lib64/libm.so.6 (0x00007f6a1a806000
liblz4.so.1 => /usr/lib64/liblz4.so.1 (0x00007fae5ad2 |
libnextcloud_csync.so.0 => /usr/lib64/libnextcloud_cs
liblzma.so.5 => /usr/lib64/liblzma.so.5 (0x00007fae5a |
libnextcloudsync.so.0 => /usr/lib64/libnextcloudsync.
libm.so.6 => /usr/lib64/libm.so.6 (0x00007fae5b1cb000 |
libpcre2-8.so.0 => /usr/lib64/libpcre2-8.so.0 (0x0000
libnextcloud_csync.so.0 => /usr/lib64/libnextcloud_cs | libpcre.so.1
=> /usr/lib64/libpcre.so.1 (0x00007f6a1a
libnextcloudsync.so.0 => /usr/lib64/libnextcloudsync. | libpng16.so.16
=> /usr/lib64/libpng16.so.16 (0x00007f
libpcre2-16.so.0 => /usr/lib64/libpcre2-16.so.0 (0x00 |
libpthread.so.0 => /usr/lib64/libpthread.so.0 (0x0000
libpcre2-8.so.0 => /usr/lib64/libpcre2-8.so.0 (0x0000 |
libQt5Core.so.5 => not found
libpcre.so.1 => /usr/lib64/libpcre.so.1 (0x00007fae59 |
libQt5Core.so.5 => not found
libpng16.so.16 => /usr/lib64/libpng16.so.16 (0x00007f |
libQt5Core.so.5 => not found
libpthread.so.0 => /usr/lib64/libpthread.so.0 (0x0000 |
libQt5Core.so.5 => not found
libQt5Core.so.5 => /usr/lib64/libQt5Core.so.5 (0x0000 |
libQt5Core.so.5 => not found
libQt5DBus.so.5 => /usr/lib64/libQt5DBus.so.5 (0x0000 |
libQt5Core.so.5 => not found
libQt5Gui.so.5 => /usr/lib64/libQt5Gui.so.5 (0x00007f |
libQt5Core.so.5 => not found
libqt5keychain.so.1 => /usr/lib64/libqt5keychain.so.1 |
libQt5Core.so.5 => not found
libQt5Network.so.5 => /usr/lib64/libQt5Network.so.5 ( |
libQt5Core.so.5 => not found
libQt5Svg.so.5 => /usr/lib64/libQt5Svg.so.5 (0x00007f |
libQt5Core.so.5 => not found
libQt5WebSockets.so.5 => /usr/lib64/libQt5WebSockets. |
libQt5DBus.so.5 => /usr/lib64/libQt5DBus.so.5 (0x0000
libQt5Widgets.so.5 => /usr/lib64/libQt5Widgets.so.5 ( | libQt5Gui.so.5
=> /usr/lib64/libQt5Gui.so.5 (0x00007f
libresolv.so.2 => /usr/lib64/libresolv.so.2 (0x00007f |
libqt5keychain.so.1 => /usr/lib64/libqt5keychain.so.1
librt.so.1 => /usr/lib64/librt.so.1 (0x00007fae5ae660 |
libQt5Network.so.5 => /usr/lib64/libQt5Network.so.5 (
libselinux.so.1 => /usr/lib64/libselinux.so.1 (0x0000 | libQt5Svg.so.5
=> /usr/lib64/libQt5Svg.so.5 (0x00007f
libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x0000 |
libQt5WebSockets.so.5 => /usr/lib64/libQt5WebSockets.
libssl.so.1.1 => /usr/lib64/libssl.so.1.1 (0x00007fae |
libQt5Widgets.so.5 => /usr/lib64/libQt5Widgets.so.5 (
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007f | libresolv.so.2
=> /usr/lib64/libresolv.so.2 (0x00007f
libsystemd.so.0 => /usr/lib64/libsystemd.so.0 (0x0000 | librt.so.1 =>
/usr/lib64/librt.so.1 (0x00007f6a19d960
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007fae58e4 |
libselinux.so.1 => /usr/lib64/libselinux.so.1 (0x0000
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007fae58b8 |
libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x0000
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007fae58bb | libssl.so.1.1
=> /usr/lib64/libssl.so.1.1 (0x00007f6a
libXext.so.6 => /usr/lib64/libXext.so.6 (0x00007fae58 | libstdc++.so.6
=> /usr/lib64/libstdc++.so.6 (0x00007f
libz.so.1 => /usr/lib64/libz.so.1 (0x00007fae5ca37000 |
libsystemd.so.0 => /usr/lib64/libsystemd.so.0 (0x0000
libzstd.so.1 => /usr/lib64/libzstd.so.1 (0x00007fae5a | libX11.so.6 =>
/usr/lib64/libX11.so.6 (0x00007f6a1a12
linux-vdso.so.1 (0x00007ffd0f5a8000) | libXau.so.6 =>
/usr/lib64/libXau.so.6 (0x00007f6a19b0
> libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007f6a19e5
> libXext.so.6 => /usr/lib64/libXext.so.6 (0x00007f6a1a
> libz.so.1 => /usr/lib64/libz.so.1 (0x00007f6a1b8f0000
> libzstd.so.1 => /usr/lib64/libzstd.so.1 (0x00007f6a19
> linux-vdso.so.1 (0x00007ffc020ff000)