Re: [img-user-forum:386] Digest for img-user-forum@lbl.gov - 1 update in 1 topic

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I-Min Chen

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Nov 24, 2021, 4:16:53 PM11/24/21
to img-use...@lbl.gov
We have not switched the metagenome annotation pipeline to use the new KEGG yet.
We can continue processing your two pending metagenomes using the old reference database.


On Wed, Nov 24, 2021 at 12:44 PM <img-use...@lbl.gov> wrote:
Sheryl Murdock <sheryl...@gmail.com>: Nov 24 10:47AM -0800

Hi there,
 
I just noticed an announcement from the summer that the KEGG database used
by IMG was being updated. Has that happened and if so, can we request
reannotation of existing metagenomes? I currently have two metagenomes in
the queue which would presumably be annotated with the updated KEGG and 20
others from the same project previously annotated with the old version.
Upon reannotation, an extension of the data embargo would be appreciated,
even if only for an extra year.
 
Cheers,
Sheryl
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I-Min Chen

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Dec 3, 2021, 4:31:29 PM12/3/21
to img-use...@lbl.gov, svs...@g.clemson.edu
Sam, you don't seem to have an IMG account. 
Please use your JGI SSO to log into IMG/MER to request an IMG account: https://img.jgi.doe.gov/mer/


On Fri, Dec 3, 2021 at 12:44 PM <img-use...@lbl.gov> wrote:
Sam Stuckert <svs...@g.clemson.edu>: Dec 02 12:52PM -0800

As an aside, when I try to upload our data to IMG to run BLAST through the
site I am eternally stuck on the login page regardless of whether my login
is correct.

 
On Wednesday, December 1, 2021 at 1:15:12 PM UTC-5 Sam Stuckert wrote:
 
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