How to download sequences and genome infos from many img terms?

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Sixing Huang

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Feb 25, 2014, 5:23:31 PM2/25/14

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Hello, community.

I would like to ask, do any of you have an idea how to download the protein sequences and their genome infos of a img term, like this one:

https://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=ImgTermBrowser&page=imgTermDetail&term_oid=6679

Is there a ftp site or an API that I can use to get those data. On the website I can only select them and what came through download is an Excel file. And what I need is their protein sequences.

I ask because I want several of them and it will be difficult to do it manually.

Thank you very much for your help!!!

Jinghua Huang

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Feb 26, 2014, 4:10:13 PM2/26/14

to img-use...@lbl.gov

You can add the 230 genes into Gene Cart, and then use the "Upload & Export" tab to download the protein sequences.

Similarly, you can add the 229 genomes into the Genome Cart, and then export the Genome info.