About the result tables,

[JK Hong]

Hi.

I'm struggling with the output data of phylogenetic composition. 

I got two tables which are named as "Table 8 taxonomic composition", and "gene_phylogeny".

I thought that the results in "gene_phylogeny" would be summarized in "Table 8", however, the net balance of the number of contigs is inconsistent with each other.

I searched the algorithm of how taxonomic composition is decided during the JGI annotation pipeline and found that the "lastal 983" is used for extracting the taxonomic information from the annotated genes. However, it is still uncertain to me.

Can anyone explain the procedure for creating both tables?

Thanks.