<Dockerfile.new><LoginDialog.ui.xml><login.gsp.new><docker-compose.yml>
On Feb 8, 2021, at 3:54 PM, Michał T. Lorenc <m.t.l...@gmail.com> wrote:Hi Nathan,I would like to use docker-compose.yml file for Apollo because I run other web services. However, I changed the file to:
version: '3.3'
services:
apollo:
build: Apollo-2.6.2
restart: always
ports:
- "8888:8080"
volumes:
- ./data/jbrowse:/data
- ./data/postgres-data:/var/lib/postgresql
Unfortunately, the error remained:
Formatting Yeast example data ...done.
To see the yeast example data, browse to http://your.jbrowse.root/index.html?data=sample_data/json/yeast.
:javacNote: /apollo/src/gwt/org/bbop/apollo/gwt/client/TrackPanel.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
:gwtc FAILED
FAILURE: Build failed with an exception.
* What went wrong:
Execution failed for task ':gwtc'.
> Java returned: 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.
BUILD FAILED
Total time: 7 mins 47.591 secs
***************************************
NOTE: Please set the memory for your servlet container (tomcat, jetty, etc.) or Apollo may not start correctly: http://genomearchitect.readthedocs.io/en/latest/Troubleshooting.html#suggested-tomcat-memory-settings
***************************************
cp: cannot stat '/apollo/target/apollo*.war': No such file or directory
mv: cannot stat '/tmp/apollo.war': No such file or directory
Please find attached all files which I modified.Thank you in advance,Best wishes,Michal
<docker-compose.yml><Dockerfile.new><login.gsp><LoginDialog.ui.xml><apollo-config.groovy>
<docker-compose.yml><docker-apollo-config.groovy><Dockerfile><login.gsp><LoginDialog.ui.xml>
Also, could you point me to your fork in the follow-up email if there is nothing public? It would be easier than patching the individual files.NathanBegin forwarded message:
It’s working for me on your forwarded port 8888 based on my changes and what I believe you have in master:
<PastedGraphic-1.tiff>
On Feb 17, 2021, at 5:46 PM, Michał T. Lorenc <m.t.l...@gmail.com> wrote:
Hi Nathan,
Thank you. Tools menu does not appear in Apollo: