Hi,
I'm very new to apollo/jbrowse, and I'm trying to understand how to create my tracks, and what's the best way to do it.
At the moment I'm struggling to understand how I create a splice site track generated with portcullis. It's a bed file format and here it's how it looks like.
track name="junctions" description="Portcullis V1.1.2 0.5 junctions"
Scf0000001 97855 98276 portcullis_pass_3 1.000 - 97998 98129 255,0,0 2 143,147 0,274
Scf0000001 99446 129837 portcullis_pass_4 0.884 - 99591 129782 255,0,0 2 145,55 0,30336
Scf0000001 99460 193089 portcullis_pass_5 0.892 - 99591 192983 255,0,0 2 131,106 0,93523
Scf0000001 129782 193123 portcullis_pass_10 0.888 - 129825 192983 255,0,0 2 43,140 0,63201
Scf0000001 152628 204718 portcullis_pass_12 0.884 - 152743 204696 255,0,0 2 115,22 0,52068
Scf0000001 204571 204984 portcullis_pass_13 1.000 - 204718 204837 255,0,0 2 147,147 0,266
Scf0000001 204603 205044 portcullis_pass_14 1.000 - 204718 204930 255,0,0 2 115,114 0,327
Scf0000001 204908 205972 portcullis_pass_15 0.692 - 205055 205840 255,0,0 2 147,132 0,932
Scf0000001 204924 206379 portcullis_pass_16 0.621 - 205055 206360 255,0,0 2 131,19 0,1436
Any advice?
Thanks a lot
Francesco