data.gsp not found

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Michał T. Lorenc

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Jun 2, 2021, 1:04:32 AM6/2/21
to apollo
Hi all,
One of our organism in Apollo has started to show an empty annotation track.
The only thing which appears in /var/log/tomcat7/localhost.*.log is:

Jun 01, 2021 2:00:44 AM org.apache.catalina.core.ApplicationContext log
INFO: GroovyPagesServlet:  "/WEB-INF/grails-app/views/jbrowse/data.gsp" not found

How is it possible to fix it?

Thank you in advance,

Michal

Garrett Stevens

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Jun 14, 2021, 12:46:09 PM6/14/21
to apollo, m.t.l...@gmail.com
Hi Michal,

Is it possible the data directory for that organism has an extra directory inside it? It looks like this may have been a similar case that was caused by an extra subdirectory: http://gmod.827538.n3.nabble.com/Error-404-on-WEB-INF-grails-app-views-jbrowse-data-gsp-td4057101.html.

Regards,
Garrett

Michał T. Lorenc

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Jul 12, 2021, 8:50:19 PM7/12/21
to Garrett Stevens, apollo
Hi Garrett,
Thank you for your answer. However, I have the following folders:
  • seq
  • names
  • tracks
However, it appears that there are some errors inside Chrome's Developer Tools :

Screen Shot 2021-07-13 at 10.39.39 AM.png

Do you think that these errors might cause the problem?

Garrett Stevens

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Jul 21, 2021, 12:11:07 PM7/21/21
to Michał T. Lorenc, apollo
Hi Michał,
I don't think those warnings in the Developer Tools are related to your problem.

Garrett
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