strange compile error

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Tahir Malas

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Jan 19, 2021, 6:39:51 PMJan 19
to MAGMA User
Hi,

When I tried to use magma SVD functions (e.g., magma_cgesvd) I got a strange error like this:

/opt/rh/devtoolset-7/root/usr/libexec/gcc/x86_64-redhat-linux/7/ld: .../output/Linux/3rd_party_rpms/Install/cuda/lib64/libblas.a(cgemm.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC
/opt/rh/devtoolset-7/root/usr/libexec/gcc/x86_64-redhat-linux/7/ld: final link failed: Bad value  

I was using LU routines without any problem so far. We do use -fPIC flag in our makefile. Does anyone came acrros with this error or have any idea on how to fix it?

Thanks in advance,

Tahir

Mark Gates

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Jan 20, 2021, 11:54:41 AMJan 20
to Tahir Malas, MAGMA User
How did you compile MAGMA, with CMake or using Makefile? If with Makefile, what is your make.inc file? What CPU BLAS & LAPACK library are you linking with?

Does this error occur when linking your application? What is your link command line?

Mark

Tahir Malas

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Jan 20, 2021, 12:41:18 PMJan 20
to Mark Gates, MAGMA User
We used make.inc.mkl-gcc-ilp64, and only changed GPU_TARGET as Kepler Maxwell Pascal Volta. We link with MKL library. 

It happens during linking and here is the command:  /opt/rh/devtoolset-7/root/usr/bin/g++ -shared -o /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/bin/peakview_core1.so.part /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/peakview/python/SIPDIR/sippeakview_core1AccuracyDefaultSetting.o /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/peakview/python/SIPDIR/sippeakview_core1CustomAccuracySet.o /home/loc
//many files
 /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/peakview/python/SIPDIR/sippeakview_core1dcomplexVector.o /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/lib/libthreadpool.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/lib/libcache.a -L /opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 -Bstatic -lgcc -lquadmath -lstdc++_nonshared -Bdynamic -O3 -ggdb -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/bin -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/lib -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/slib -L/home/local1/Scratch/tahir.malas/Work/peakview/lib64/Static_library/Static_Linux /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/magma/lib/libmagma_sparse.a  /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/magma/lib/libmagma.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcudart_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcusparse_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcusolver_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcublas_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libblas.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libbsd.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcom_err.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcublas_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcublasLt_static.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libculibos.a -Bstatic  -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/geompack/lib -lgeompack -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/sqlite3/lib -lsqlite3  -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/tbb/lib_debug -ltbb_debug -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/ippcp/lib -Bstatic -lippcp -Bdynamic -lpeakview_license -lcrypt -lQtCore -lpeakview_common -Wl,--start-group -Bstatic -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/binutils/lib -lbfd -liberty -Wl,--end-group -lpeakview_logger -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/gfortran-4.0.0 -Bstatic -lgfortran -Bdynamic -Wl,--start-group -Bstatic /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libumfpack.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libcholmod.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libcamd.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libklu.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libccolamd.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libcolamd.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libamd.a /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib/libsuitesparseconfig.a -Wl,--end-group -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/suite_sparse/lib -lmetis -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/trilinos/lib -lbelos -lbelosepetra -lteuchosremainder  -lteuchosnumerics -lepetra -lteuchoscomm -lteuchosparameterlist -lteuchoscore  -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2 -L/home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/mkl/lib -fPIC -Wl,--no-as-needed -lmkl_rt_small_ilp64 -Bstatic -lgomp -Bdynamic -lpthread -lm -ldl  

Thanks,

Tahir

Mark Gates

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Jan 23, 2021, 12:59:26 AMJan 23
to Tahir Malas, MAGMA User
It looks like you're creating a shared library, but linking in static libraries such as:

    /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcudart_static.a
    /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcusparse_static.a
    /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcusolver_static.a
    /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libcublas_static.a
    /home/local1/Scratch/tahir.malas/Work/peakview/output/Linux/3rd_party_rpms/Install/cuda/lib64/libblas.a

If those aren't compiled with -fPIC, then linking the shared library won't work.

It's a bit unclear to me why you're linking with libblas.a and later with libmkl.

In any case, the issue doesn't seem specific to MAGMA.

Mark

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