Hi Matt
Thank you for reaching out!
I will now discuss directly about a particular subject with ID 397760 (one of the many).
I extracted the time series for all the four separate files (rfMRI_REST1_LR_hp2000_clean_rclean_tclean.nii, rfMRI_REST1_RL_hp2000_clean_rclean_tclean.nii, rfMRI_REST2_LR_hp2000_clean_rclean_tclean.nii, rfMRI_REST2_RL_hp2000_clean_rclean_tclean.nii) successfully, for both HCP glasser and Brainnetome atlases. There were no ROIs with zero voxels.
However, when I run it on the supplied concatenated file "rfMRI_REST_hp2000_clean_rclean_tclean.nii", there are 100 HCP Glasser atlas ROIs with zero voxels.
I hope this helps.
Warm regards,
Shyamchand
Glasser, Matthew <glas...@wustl.edu>: Apr 25 10:00PM
Is there a specific file you would like us to check?
Matt.
From: Shyamchand Singh <mesg...@gmail.com>
Date: Thursday, April 23, 2026 at 12:37 AM
To: HCP-Users
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