Someone asked me about the hypothalamus in fMRI recently. It did not seem that there was much BOLD variance there (perhaps hypothalamic blood flow does not vary much).
If the question is about subparcellating the CIFTI ventral diencephalon structure, yes that should be possible. You would create a cifti label using the wb_command -cifti-create-label command using the output of wb_command -volume-label-import on your hypothalamic segmentation volume as the label volume and https://github.com/Washington-University/HCPpipelines/blob/master/global/templates/91282_Greyordinates/Atlas_ROIs.2.nii.gz as the structure label volume.
Matt.
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