2nd level analysis in SPM12 or FSL

[Debora Toro]

Hi Everyone!

I've download tfMRI analysed data (social task) from 1200 release. My purpose with this data is to do some 2nd level analysis in SPM12 or FSL but neither support CIFTI files. How can I solve this problem? 

thank you 

Debora

[Glasser, Matthew]

You can do it in FSL.  This script gives an example how:

 

https://github.com/Washington-University/HCPpipelines/blob/level3-task-fmri-analysis/TaskfMRIAnalysis/TaskfMRILevel3.sh

 

You may wish to use PALM for multiple comparison correction.

 

Matt.

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