B0 distance parameter

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Alberto Villagran

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May 27, 2026, 4:57:55 PM (7 days ago) May 27
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Dear HCPpipelines team,

(I am sorry for if it is cross posting, I opened a github issue with it, but the question did not get solved yet)

I would like to ask about the reasoning about b0dist=45:

HCPpipelines/DiffusionPreprocessing/DiffPreprocPipeline_PreEddy.sh

Line 237 in 6801b5f

b0dist=45 # Minimum distance in volumes between b0s considered for preprocessing

During the preparation for TOPUP, this option collects only 2 b0 volumes per PE from our dataset with 7 b0 volumes per phase encoding direction.
So we were wondering whether to adjust this parameter to 0 so all data is considered (for pediatric datasets for example), or to keep the default value for standardization of the pipeline.

Thanks in advance
Best,
Alberto


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