Dear HCPpipelines team,
(I am sorry for if it is cross posting, I opened a github issue with it, but the question did not get solved yet)
I would like to ask about the reasoning about b0dist=45:
HCPpipelines/DiffusionPreprocessing/DiffPreprocPipeline_PreEddy.sh
Line 237 in 6801b5f
b0dist=45 # Minimum distance in volumes between b0s considered for preprocessingDuring the preparation for TOPUP, this option collects
only 2 b0 volumes per PE from our dataset with 7 b0 volumes per phase
encoding direction.
So we were wondering whether to adjust this parameter to 0 so all data
is considered (for pediatric datasets for example), or to keep the
default value for standardization of the pipeline.
Thanks in advance
Best,
Alberto