T1w_acpc_dc_restore_1.50.nii.gz

[Sebastian Markett]

Dear all,

I am experiencing some issues with the output from the HCP diffusion pipeline (on my own data). For some of my participants, the T1w/T1w_acpc_dc_restore_1.50.nii.gz reference image does not match the voxel dimensions of the preprocessed Diffusion/data/data.nii.gz images. The reference image has 1.5 mm voxels with dimensions 121 145 121, the data.nii.gz have 1.5mm voxels with dimensions 140 140 92. I don’t really see why this is only for some participants, and I have problems troubleshooting.

Can anyone point me to the scripts / code lines where T1w_acpc_dc_restore_1.50.nii.gz is created?

Or does anyone have an idea where I might have picked up an error on the way?

Can I just manually bring the two images into register?

Thanks a lot

Sebastian 

[Glasser, Matt]

I don’t understand this.  Lines 80-81 create the T1w_acpc_dc_restore_1.50.nii.gz and then it is used to create "$T1wOutputDirectory"/data (Line 107).  Is it possible that you aren’t using the right diffusion timeseries (${StudyFolder}/${Subject}/T1w/Diffusion/data.nii.gz)?

 

Matt.

--
You received this message because you are subscribed to the Google Groups "HCP-Users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to hcp-users+...@humanconnectome.org.
To view this discussion on the web visit https://groups.google.com/a/humanconnectome.org/d/msgid/hcp-users/27828187-8370-46B8-B2B0-3837210B5ED5%40hu-berlin.de.

 

---

The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

[Sebastian Markett]

yes.. that was the issue. Thank you!!