Automated Temporal ICA Code

88 views
Skip to first unread message

Mohammad Ebrahim Katebi

unread,
Feb 18, 2025, 3:57:22 AM2/18/25
to HCP-Users, Reza Rajimehr
Dear Dr. Glasser,

I found your preprint on the automated Temporal ICA and was intrigued by the possibility of using it to improve one of our ongoing projects.

We intend to use this method to clean up the HCP 7T Resting-state data (tthe ICA-FIX cleaned version). While the preprint mentions that the new pipeline is available, I have not been able to locate the new automated version in the HCP pipelines on GitHub.

I would appreciate your guidance on this matter.

Best regards,
Mohammad Ebrahim Katebi
MD-MPH Student, Tehran University of Medical Sciences
Researcher, School of Cognitive Sciences, IPM

Glasser, Matthew

unread,
Feb 18, 2025, 7:04:25 AM2/18/25
to hcp-...@humanconnectome.org, Reza Rajimehr

We have already done this.  Hopefully we will be able to make the data available.

 

Matt.

--
You received this message because you are subscribed to the Google Groups "HCP-Users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to hcp-users+...@humanconnectome.org.
To view this discussion visit https://groups.google.com/a/humanconnectome.org/d/msgid/hcp-users/cdde9f6c-114d-476c-8f96-ad528a91eaccn%40humanconnectome.org.

 


The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.

Reza Rajimehr

unread,
Feb 18, 2025, 8:18:19 AM2/18/25
to Glasser, Matthew, hcp-...@humanconnectome.org
Hi Matt,

Is there an estimate of when it will be available? We are kinda in rush to do the temporal ICA clean-up of HCP 7T fMRI data.

Thank you,
Reza

Mohammad Ebrahim Katebi

unread,
Feb 21, 2025, 3:40:43 PM2/21/25
to HCP-Users, raji...@gmail.com, hcp-...@humanconnectome.org, glas...@wustl.edu
Dear Matt,

Since the release date is uncertain, would it be possible that we get the code / script of the automated tICA cleanup pipeline (the latest version)? I have not maneged to find it on Github.

Best regards,
Ebrahim
Reply all
Reply to author
Forward
0 new messages