wb_command error when opening it

[Tommy Pirvu]

Hello,

I am having an issue with regards to opening wb_command that I would appreciate some assistance. I have connectome workbench downloaded and I can use wb_view and view all of my images perfectly, but when trying to use wb_command the terminal automatically logs me out. 

I use a MacBook Pro version 12.3.1 and I feel like it might have something with the version of the Mac I am using or my default shell. For some reason, I am getting an error when uploading a screenshot, but here is the syntax:

Last login: Thu Apr 14 13:11:32 on ttys000

/Users/tommypirvu/Desktop/workbench/macosx64_apps/bashcomplete_wb_command ; exit;

The default interactive shell is now zsh.

To update your account to use zsh, please run `chsh -s /bin/zsh`.

For more details, please visit https://support.apple.com/kb/HT208050.

Tommys-MacBook-Pro:~ tommypirvu$ /Users/tommypirvu/Desktop/workbench/macosx64_apps/bashcomplete_wb_command ; exit;

logout

Saving session...

...copying shared history...

...saving history...truncating history files...

...completed.

[Process completed]

Best,

Tommy

[Glasser, Matt]

You should use the executable in bin_macosx??

 

This works fine for me on Mac OS 12.3.1.

 

Matt.

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[Harwell, John]

In a terminal window (command line), try running wb_command from the “bin_macosx64” directory, probably “/Users/tommypirvu/workbench/bin_macosx64/wb_command”.

 

John Harwell

 

From: Tommy Pirvu <tommy...@northwestern.edu>
Reply-To: "hcp-...@humanconnectome.org" <hcp-...@humanconnectome.org>
Date: Thursday, April 14, 2022 at 1:21 PM
To: HCP-Users <hcp-...@humanconnectome.org>
Subject: [hcp-users] wb_command error when opening it

 

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[Tommy Pirvu]

Hi,

I tried to use the executable in bin_macosx64 as Matt suggested and still no luck. It is still automatically logging me out and exiting the window.

I just tried to run wb_command in a new terminal window at the /Users/tommypirvu/Desktop/workbench/bin_macosx64 level and I am getting a "command not found" message back.

Do you think this has something to do with my Mac permissions? 

[Glasser, Matt]

How about posting exactly what you did this time.

Matt.

 

From: Tommy Pirvu <tommy...@northwestern.edu>
Reply-To: "hcp-...@humanconnectome.org" <hcp-...@humanconnectome.org>
Date: Thursday, April 14, 2022 at 1:47 PM
To: HCP-Users <hcp-...@humanconnectome.org>
Cc: "Glasser, Matt" <glas...@wustl.edu>
Subject: Re: [hcp-users] wb_command error when opening it

 

 

Hi Matt,

 

I tried the executable in bin_macosx64 and still no luck. It automatically exits the command line for some reason and logs me out.

To view this discussion on the web visit https://groups.google.com/a/humanconnectome.org/d/msgid/hcp-users/36944f25-28fc-4883-994d-18faa5f9a358n%40humanconnectome.org.

[Tommy Pirvu]

Yes,

I just opened up my connectome folder and when into bin_macosx64 double clicked the executable terminal and I still got the same message as I posted in my first message.

I went ahead opened a new terminal and ran wb_command at the /Users/tommypirvu/Desktop/workbench/bin_macosx64 level and I am getting a "command not found" message back.

Tommy

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[Glasser, Matt]

I wouldn’t do the first thing, because that is not how commandline tools are supposed to be interacted with in general.

 

Please post a copy paste of exactly what you did when you opened a separate terminal.  If you really did open a terminal and then navigated to that folder and typed wb_command, you would need to do ./wb_command as that folder is presumably not on your PATH.

 

Matt.

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[Tommy Pirvu]

It worked now! I did exactly what you said and it worked now. Thank you for the help Matt

I appreciate it. 

Best,

Tommy

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[Coalson, Timothy Scott (S&T-Student)]

The README.txt should explain how to set up your PATH so that it works without needing to specify the folder to look in.  The "bashcomplete" files are something else entirely, but you'd need to read to the end of the instructions to figure out what they are (and on mac, it is significant extra work to use them).  It looks like it does not currently mention that double clicking wb_command (or wb_import or wb_shortcuts) in a folder window is not expected to do anything useful.

Note that each shell has a different way to set up PATH, so if you do change your login shell, you will need to figure out how to set it for the new shell also (we don't currently have instructions for zsh).  Choice of login shell is a matter of user preference and, generally speaking, should not cause problems (as long as the shell obeys the "shebang" of well-formed scripts...).

Tim

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From: Tommy Pirvu <tommy...@gmail.com>
Sent: Thursday, April 14, 2022 2:03 PM

To: hcp-...@humanconnectome.org <hcp-...@humanconnectome.org>
Subject: Re: [hcp-users] wb_command error when opening it

 

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