Genetic data for HCP-YA and HCP-Aging

[Daniel Callow]

Hello,

I have been trying to figure out how to obtain/apply for access to the genetic information regarding the HCP-YA and HCP-Aging datasets. I have received access to both datasets through NIH-NDA however, I haven't been able to find/request access for the genetic data. I am specifically interested in genotyping (APOE-e4).

Any help or guidance anyone can provide would be greatly appreciated!

Best,

Daniel Callow

[Elam, Jennifer]

Hi Daniel,

The APOE-e4 genotyping data for HCP-Aging is not yet released (we actually haven't received the data from the geneticists yet, let alone map it to NDA), so it will probably be several months before we can get that data out.

For HCP-YA, all the SNP data (1142 subjects ages 22-35, ~400 are twins) is available on dbGaP https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001364.v1.p1

dbGaP Study The Human Connectome Project (HCP) has acquired vast amounts of data about the pattern of long-distance connections (wiring) in the brains of large numbers of healthy participants aged 22-35 using cutting-edge MRI and MEG neuroimaging, and extensive behavioral testing. www.ncbi.nlm.nih.gov

If you haven't ever gotten data from dbGaP, it's a bit of a process, but hopefully it's worth it for you!

Best,

Jenn

Jennifer Elam, Ph.D.
Scientific Outreach, Human Connectome Project
Washington University School of Medicine
Department of Neuroscience, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
el...@wustl.edu
www.humanconnectome.org

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From: Daniel Callow <ddcc...@gmail.com>
Sent: Wednesday, March 24, 2021 7:48 AM
To: HCP-Users <hcp-...@humanconnectome.org>
Subject: [hcp-users] Genetic data for HCP-YA and HCP-Aging

 

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[Daniel Callow]

Jennifer,

Thank you for letting me know! I assume there may be an announcement when it is available?

Best,

Daniel 

To view this discussion on the web visit https://groups.google.com/a/humanconnectome.org/d/msgid/hcp-users/CH2PR02MB649151B514452DFBE9FF1CDFCC639%40CH2PR02MB6491.namprd02.prod.outlook.com.

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Daniel Callow

Graduate Student, Neuroscience and Cognitive Science

COMBINE NRT Fellow

Exercise for Brain Health Lab

University of Maryland, College Park

ddcc...@gmail.com

443-254-6298

[Elam, Jennifer]

As always!

Jenn

Jennifer Elam, Ph.D.
Scientific Outreach, Human Connectome Project
Washington University School of Medicine
Department of Neuroscience, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
el...@wustl.edu
www.humanconnectome.org

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From: Daniel Callow <ddcc...@gmail.com>
Sent: Wednesday, March 24, 2021 8:18 AM
To: hcp-...@humanconnectome.org <hcp-...@humanconnectome.org>
Subject: Re: [hcp-users] Genetic data for HCP-YA and HCP-Aging

 

To view this discussion on the web visit https://groups.google.com/a/humanconnectome.org/d/msgid/hcp-users/CAPYFJRvATKd9MifO5CTYyJNLrJxOicQki3bBWpmrg_eUMYKGjg%40mail.gmail.com.