Freesurfer Pipeline - ERROR: reading ../surf/autodet.gw.stats.lh.dat

[Austin Cooper]

Hello there!

I'm wondering if you've had any experience with a recon-all error like the following. I can confirm that  autodet.gw.stats.lh.dat doesn't exist anywhere within the subject's folder(s), so I'm not sure where it is supposed to be produced. I have just changed from Freesurfer/6.0.1 to Freesurfer/7.4.1 and I wonder if this could be the issue.

Any ideas? I will also ask the Freesurfer mailing list!

The error is as follows:

mri_vol2vol done
#--------------------------------------------
#@# c2hWhiteSurfs lh Thu Jul  4 23:07:31 EDT 2024
cd /project/6001995/Shmuel_Mendola/data/MGH/HCPNaming/control/05_scan1/T1w/05/mri
mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg rawavg.aseg.presurf.mgz --wm rawavg.wm.mgz --invol rawavg.brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc.rawavg --o ../surf/lh.white.rawavg --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-wmsa --rip-surf ../surf/lh.white.preaparc.rawavg --aparc ../label/lh.aparc.annot
ERROR: reading ../surf/autodet.gw.stats.lh.dat
ERROR:
Linux bc11246.int.ets1.calculquebec.ca 4.18.0-513.24.1.el8_9.x86_64 #1 SMP Thu Apr 4 18:13:02 UTC 2024 x86_64 GNU/Linux

recon-all -s 05 exited with ERRORS at Thu Jul  4 23:07:32 EDT 2024

Warm regards,

Austin

[Glasser, Matthew]

The HCP pipelines don’t currently support FS7.X due to issues with surface placement.

 

Matt.

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[Austin Cooper]

Got it!

Thanks Matt!