HCP Pipeline and processing ADNI data to get HCP output
Scott Gurney
Hi
I am a struggling 3rd year student trying to research dementia in rsfMRI images.
I am using BrainVortexToolbox and it takes flatten left and right hemisphere data.
Currently I am only focusing on the left hemisphere and have the following files per subject from the HCP dataset
Positional (I assume anatomical) - L.flat.32k_fs_LR.surf.gii
Resting State - rfMRI_REST1_LR_Atlas.dtseries.nii
I have selected dementia subjects from the ADNI dataset and preprocessed with fmriprep with the ‘–cifti-outputs’ option but the output doesn’t appear to have what I need.
Can I use the HCPpipelines to process the ADNI data and get these files outputted?
If not how is the HCP processed that allows this data to be output?
Thank you, Scott
Glasser, Matt
I don’t know what fmriprep outputs. I suspect that the HCP Pipelines would run on ADNI data, but I don’t know a lot about it. it may require using legacy flags unless there is HCP-Style ADNI data. It looks like the BrainVortexToolbox is based around HCP Pipelines data, so perhaps things would be easier if you used HCP Pipelines.
Matt.
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