AWS access to concatenated rfMRI_REST_Atlas_MSMAll_hp2000_clean_rclean_tclean.dtseries.nii

[Andre Gouws]

Hi 

I have an AWS access key to the YA data - thank you.

As suggested by Matt in a previous threads (and others I presume): "${StudyFolder}/${Subject}/MNINonLinear/Results/rfMRI_REST/rfMRI_REST_Atlas_MSMAll_hp2000_clean_rclean_tclean.dtseries.nii is the main file to use for resting state analyses."

I am trying to get the concatenated rfMRI_REST_Atlas_MSMAll_hp2000_clean_rclean_tclean.dtseries.nii  but when I list files the only output can find is for the individual runs i.e. rfMRI_REST1_LR, rfMRI_REST1_RL, rfMRI_REST2_LR, rfMRI_REST2_RL - there is no  "rfMRI_REST" directory.

Of course I can just concatenate the dtseries files from the individual runs myself but I just wanted to check I wasn't missing something. Here is the output of aws s3 ls for the HCP and HCP_1200 folders:

*****@*****:~$ aws s3 ls s3://hcp-openaccess/HCP/133019/MNINonLinear/Results/

                           PRE rfMRI_REST1_LR/
                           PRE rfMRI_REST1_RL/
                           PRE rfMRI_REST2_LR/
                           PRE rfMRI_REST2_RL/
                           PRE tfMRI_EMOTION/
                           PRE tfMRI_EMOTION_LR/
                           PRE tfMRI_EMOTION_RL/
                           PRE tfMRI_GAMBLING/
                           PRE tfMRI_GAMBLING_LR/
                           PRE tfMRI_GAMBLING_RL/
                           PRE tfMRI_LANGUAGE/
                           PRE tfMRI_LANGUAGE_LR/
                           PRE tfMRI_LANGUAGE_RL/
                           PRE tfMRI_MOTOR/
                           PRE tfMRI_MOTOR_LR/
                           PRE tfMRI_MOTOR_RL/
                           PRE tfMRI_RELATIONAL/
                           PRE tfMRI_RELATIONAL_LR/
                           PRE tfMRI_RELATIONAL_RL/
                           PRE tfMRI_SOCIAL/
                           PRE tfMRI_SOCIAL_LR/
                           PRE tfMRI_SOCIAL_RL/
                           PRE tfMRI_WM/
                           PRE tfMRI_WM_LR/

                           PRE tfMRI_WM_RL/

*****@*****:~$ aws s3 ls s3://hcp-openaccess/HCP_1200/133019/MNINonLinear/Results/
                           PRE rfMRI_REST1_LR/
                           PRE rfMRI_REST1_RL/
                           PRE rfMRI_REST2_LR/
                           PRE rfMRI_REST2_RL/
                           PRE tfMRI_EMOTION/
                           PRE tfMRI_EMOTION_LR/
                           PRE tfMRI_EMOTION_RL/
                           PRE tfMRI_GAMBLING/
                           PRE tfMRI_GAMBLING_LR/
                           PRE tfMRI_GAMBLING_RL/
                           PRE tfMRI_LANGUAGE/
                           PRE tfMRI_LANGUAGE_LR/
                           PRE tfMRI_LANGUAGE_RL/
                           PRE tfMRI_MOTOR/
                           PRE tfMRI_MOTOR_LR/
                           PRE tfMRI_MOTOR_RL/
                           PRE tfMRI_RELATIONAL/
                           PRE tfMRI_RELATIONAL_LR/
                           PRE tfMRI_RELATIONAL_RL/
                           PRE tfMRI_SOCIAL/
                           PRE tfMRI_SOCIAL_LR/
                           PRE tfMRI_SOCIAL_RL/
                           PRE tfMRI_WM/
                           PRE tfMRI_WM_LR/
                           PRE tfMRI_WM_RL/

Thanks for any help

Andre'

[Elam, Jennifer]

Hi Andre,

We did not release concatenated, tICA, and Recleaned data in the S1200 release (2017 release). You should use the recommended and updated data from the 2025 release (see release announcement) which is currently only available through BALSA downloading via Aspera. We are working on alternatives but don't have them implemented yet.

Best,

Jenn

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From: 'Andre Gouws' via HCP-Users <hcp-...@humanconnectome.org>
Sent: Tuesday, June 2, 2026 11:22 AM
To: HCP-Users <hcp-...@humanconnectome.org>
Subject: [hcp-users] AWS access to concatenated rfMRI_REST_Atlas_MSMAll_hp2000_clean_rclean_tclean.dtseries.nii

 

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[Andre Gouws]

Thanks - sorry - I do know you're getting a lot of these sorts of questions - thanks for your help.