Hi there
I am using the HCP S1200 Freesurfer data (native data). I would like to know which fsaverage was used during recon all- to calculate the transforms and where may I find the scripts folder for each subject (as is normally an output of recon-all in the regular FS pipeline).
We have some commands we usually use with the regular FS pipeline and want to apply them to HCP subjects. To do so, we need the fsaverage folder that was used during recon-all of the HCP subjects.
Thank you for your help!
____________________________
Erika Nolan
PhD Candidate, Clinical Psychology
Department of Psychology, McGill University
Department of Neurology and Neurosurgery, Montreal Neurological Institute
All the usual FS output is located in the $StudyFolder/$SubjID/T1w/$SubjID folder.
We used whatever version of ‘fsaverage’ is the default in ‘recon-all’.
Cheers,
-MH
--
Michael Harms, Ph.D.
-----------------------------------------------------------
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO 63110 Email: mha...@wustl.edu
From: Erika Nolan <erika...@mail.mcgill.ca>
Reply-To: "hcp-...@humanconnectome.org" <hcp-...@humanconnectome.org>
Date: Wednesday, May 18, 2022 at 10:31 AM
To: "hcp-...@humanconnectome.org" <hcp-...@humanconnectome.org>
Subject: [hcp-users] Question regarding fsaverage
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____________________________
Erika Nolan
PhD Candidate, Clinical Psychology
Department of Psychology, McGill University
Department of Neurology and Neurosurgery, Montreal Neurological Institute
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