Fwd: Can we make very minor changes to the article before publication?

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Tim Clark

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Mar 25, 2015, 12:38:58 PM3/25/15
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We are okayed to make those changes at proofing stage.


Begin forwarded message:

Date: March 25, 2015 at 12:32:24 PM EDT
Subject: Re: Can we make very minor changes to the article before publication?
From: Sophie Kusy <sop...@peerj.com>
To: Tim Clark <tim_...@harvard.edu>
Cc: Kenneth Traynor <ken...@peerj.com>

Hi Tim,

That would work.
Kenneth will be in touch with you at proofing stage.

Thanks for your patience!
Sophie

On Tue, Mar 24, 2015 at 12:57 PM, Tim Clark <tim_...@harvard.edu> wrote:
What was proposed by my colleagues is:

Replace the following sentence:

“For example, the DOI resolver at http://doi.org  resolves the DOI 10.1098/rsos.140216 to the URI http://rsos.royalsocietypublishing.org/content/1/3/140216.
And the identifiers.org resolution service, at http://identifiers.org, resolves the PubMed identifier 16333295 to http://www.ncbi.nlm.nih.gov/pubmed/16333295.” 

…with…

“For example, the DOI 10.1098/rsos.140216 when appended to the DOI resolver at http://doi.org, resolves to the URI http://rsos.royalsocietypublishing.org/content/1/3/140216.
“Similarly, the biosample identifier SAMEG120702, when appended as (“biosample/SAMEG120702”) to the identifiers.org resolver at http://identifiers.org, resolves to the landing page www.ebi.ac.uk/biosamples/group/SAMEG120702.” 

Also, delete the following sentence….

“Landing pages should combine human-readable and machine-readable information on a selection of the following items.”

Tim

On Mar 24, 2015, at 3:51 PM, Sophie Kusy <sop...@peerj.com> wrote:

The right answer is probably "It depends".

Maybe you could send me the list of the edits you would like to make, and I will check with our production team (Kenneth cc'd).

Of course, if it changes the meaning, we'll have to send the manuscript back to the Academic Editor for approval.

On Tue, Mar 24, 2015 at 12:29 PM, Tim Clark <tim_...@harvard.edu> wrote:
We are thinking to change a couple of sentences.  Colleagues thought they seemed a bit garbled, we want to clarify.  Does that work?



On Mar 24, 2015, at 1:52 PM, Sophie Kusy <sop...@peerj.com> wrote:

Hi Tim,

Very minor changes (typos, misspellings) can be fixed at proofing stage.

We're still not sure when we're going to release the first Com Sci articles, but next month is the target!

Best
Sophie



On Mon, Mar 23, 2015 at 6:05 PM, Tim Clark <tim_...@harvard.edu> wrote:
Hi Sophie,

We received a couple of comments from colleagues on the preprint and would like to make some very minor changes to our article. Can we do this before official publication date?  If so, how?

Thanks

Tim
---------------------------------------------
Tim Clark, Ph.D.
Assistant Professor of Neurology, Harvard Medical School
Director, Biomedical Informatics Core, Massachusetts General Hospital
co-Director, Data and Statistics Core, Massachusetts Alzheimer Disease Research Center
website: http://mindinformatics.org
mobile: +1 617-947-7098 fax: +1 617-213-5418

On Feb 11, 2015, at 12:51 PM, Sophie Kusy <sop...@peerj.com> wrote:

Perfect!

One last thing... I've edited the subject areas to be "Human-Computer Interaction", "World Wide Web and Web Science" and "Digital Libraries". Is this correct? Feel free to ask for changes if those aren't appropriate!!
The complete list is here <https://peerj.com/computer-science/>. Just let me know. Thanks!


On Wed, Feb 11, 2015 at 9:43 AM, Tim Clark <tim_...@harvard.edu> wrote:
Sophie - 

All participated in the various "spec development" aspects of the project, which I guess equates  to "designed the software" but not exactly as these are analytic criteria as targets for software to meet. 

Joan Starr and I conceived the project and wrote the paper, with me writing the majority.

We presented this material at a workshop after the paper was submitted to PeerJ, summary of conclusions essentially as accepted.

Tim


On Feb 11, 2015, at 11:42 AM, Sophie Kusy <sop...@peerj.com> wrote:

Thanks Tim!

Before we publish your PeerJ Computer Science PrePrint, please could you answer 2 additional declarations?

1. Which authors wrote the code, designed the software or performed the computation work?

2. Has a version of this article been presented at a conference?

Many thanks!
Sophie

On Wed, Feb 11, 2015 at 4:13 AM, Tim Clark <tim_...@harvard.edu> wrote:
OK, then we are good to go and we are happy to be accepted in the inaugural issue of PeerJ Computer Science. 

All best

Tim

On Feb 10, 2015, at 11:14 PM, Pete Binfield <editoria...@peerj.com> wrote:

Absolutely

Pete
 
Peter Binfield, PhD
Co-Founder and Publisher, PeerJ
 
Web: www.PeerJ.com 
Twitter: @p_binfield & @ThePeerJ
Blog: blog.PeerJ.com 
 
Sign up for a free PeerJ account at https://www.PeerJ.com
 
Office: + 1 (415) 413 4596
 
PO Box 614, Corte Madera, CA 94976, USA
On Mon, 9 Feb at 2:41 pm , Tim_clark <tim_...@harvard.edu> wrote:
Sounds fine.  And I assume I can add a header to the PDF as I often do for such preprints, saying “accepted for publication by <journal>”, right?

Tim


On Feb 9, 2015, at 5:12 PM, Pete Binfield <editoria...@peerj.com> wrote:

Many thanks Tim, we did spot that comment and I alerted our production staff as well

As to the preprint that we were discussing, you asked:

>>To confirm (regarding the preprint) – are you saying that you would like to update the current preprint with the Accepted version of your manuscript?
>Yes I would, and if possible bearing imprint or logo of PeerJ Computer Science - as you suggest that as the publication venue.
 
Just to confirm - the preprint server doesnt have its own imprint for Computer Science (it is all one big preprint server). However, it would be tagged with the CS subject areas and in addition, your "author notes" (that get published on the preprint revision) can explain that this is being sent to the CS journal for publication. Sound good?

Pete
 
Peter Binfield, PhD
Co-Founder and Publisher, PeerJ
 
Web: www.PeerJ.com 
Twitter: @p_binfield & @ThePeerJ
Blog: blog.PeerJ.com 
 
Sign up for a free PeerJ account at https://www.PeerJ.com
 
Office: + 1 (415) 413 4596
 
PO Box 614, Corte Madera, CA 94976, USA
On Mon, 9 Feb at 9:16 am , Tim_clark <tim_...@harvard.edu> wrote:
Hi Sophie,

We received feedback from one of the referenced authors that we mis-spelled his name  (J. Baran in Gray et al. author list, mis-spelled as “Baram”, see feedback notification below).  Very sorry about that, I should have caught it!

We’d be very grateful if you could implement this correction in the final version for publication.  Meanwhile I have already made the correction in the PrePrint Archive. 

All best

Tim
---------------------------------------------
Tim Clark, Ph.D.
Assistant Professor of Neurology, Harvard Medical School
Director, Biomedical Informatics Core, Massachusetts General Hospital
co-Director, Data and Statistics Core, Massachusetts Alzheimer Disease Research Center
website: http://mindinformatics.org
mobile: +1 617-947-7098 fax: +1 617-213-5418

Begin forwarded message:

From: PeerJ Notifications <notifi...@peerj.com>
Subject: New feedback on Achieving human and machine accessibility of cited data in scholarly publications
Reply-To: PeerJ Notifications <notifi...@peerj.com>
To: Tim Clark <tim_...@harvard.edu>
Date: February 9, 2015 at 11:21:05 AM EST

PeerJ

New feedback from Joachim Baran on Achieving human and machine accessibility of cited data in scholarly publications

I am a co-author of the citation Gray et al. 2014. My name is "Baran" and not "Baram" as given in the reference section.
You can view, vote on or "accept" this feedback by going to the feedback.
"Accepting" feedback means that you feel it is substantially helpful to you in some way. Simple feedback, such as typos, should not be accepted, but voting up is encouraged.
Regards,
The PeerJ Team
peerj.com
© 2014, PeerJ, Inc. PO Box 614 Corte Madera, CA 94976, USA


6691




--
Sophie Kusy, Ph.D.
Associate Editor, PeerJ and PeerJ Computer Science
San Francisco Bay Area




--
Sophie Kusy, Ph.D.
Associate Editor, PeerJ and PeerJ Computer Science
San Francisco Bay Area




--
Sophie Kusy, Ph.D.
Associate Editor, PeerJ and PeerJ Computer Science
San Francisco Bay Area




--
Sophie Kusy, Ph.D.
Associate Editor, PeerJ and PeerJ Computer Science
San Francisco Bay Area




--
Sophie Kusy, Ph.D.
Associate Editor, PeerJ and PeerJ Computer Science
San Francisco Bay Area

Joan Starr

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Mar 25, 2015, 12:42:03 PM3/25/15
to Tim Clark, <idmeta@force11.org>

Yay! Thanks Tim,

Joan

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