I have miniconda3 on an Ubuntu 64-bit system.
I installed geopandas from conda-forge, which affected conda and conda-env:
conda: 4.3.18-py36_0 --> 4.2.13-py36_0 conda-forge
conda-env: 2.6.0-0 --> 2.6.0-0 conda-forge
When I try to import geopandas, I get
---> 9 from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
ImportError: libmfhdf.so.0: cannot open shared object file: No such file or directory
I tried installing hdf4 and h5py, but that didn't solve the problem.
Here's my conda list output, am I missing some required packages for geopandas?
asn1crypto 0.22.0 py36_0 defaults
bleach 1.5.0 py36_0 defaults
bokeh 0.12.5 py36_0 defaults
bzip2 1.0.6 3 defaults
cairo 1.14.8 0 defaults
cffi 1.10.0 py36_0 defaults
click 6.7 py36_0 defaults
click-plugins 1.0.3 py36_0 defaults
cligj 0.4.0 py36_0 defaults
conda 4.2.13 py36_0 conda-forge
conda-env 2.6.0 0 conda-forge
cryptography 1.8.1 py36_0 defaults
curl 7.49.0 1 defaults
cycler 0.10.0 py36_0 defaults
dbus 1.10.10 0 defaults
decorator 4.0.11 py36_0 defaults
descartes 1.1.0 py36_0 conda-forge
entrypoints 0.2.2 py36_1 defaults
expat 2.1.0 0 defaults
fiona 1.7.6 np112py36_0 conda-forge
fontconfig 2.12.1 3 defaults
freetype 2.5.5 2 defaults
freexl 1.0.2 1 conda-forge
gdal 2.1.3 np112py36_0 conda-forge
geopandas 0.2.1 py36_3 conda-forge
geos 3.5.0 0 defaults
giflib 5.1.4 0 conda-forge
glib 2.50.2 1 defaults
gmp 6.1.0 0 defaults
gsl 2.2.1 0 defaults
gst-plugins-base 1.8.0 0 defaults
gstreamer 1.8.0 0 defaults
h5py 2.7.0 np112py36_0 defaults
harfbuzz 0.9.39 2 defaults
hdf4 4.2.11 0 defaults
hdf5 1.8.17 1 defaults
html5lib 0.999 py36_0 defaults
icu 54.1 0 defaults
idna 2.5 py36_0 defaults
ipykernel 4.6.1 py36_0 defaults
ipython 6.0.0 py36_1 defaults
ipython_genutils 0.2.0 py36_0 defaults
ipywidgets 6.0.0 py36_0 defaults
jbig 2.1 0 defaults
jedi 0.10.2 py36_2 defaults
jinja2 2.9.6 py36_0 defaults
jpeg 9b 0 defaults
json-c 0.12 0 conda-forge
jsonschema 2.6.0 py36_0 defaults
jupyter 1.0.0 py36_3 defaults
jupyter_client 5.0.1 py36_0 defaults
jupyter_console 5.1.0 py36_0 defaults
jupyter_core 4.3.0 py36_0 defaults
kealib 1.4.6 0 defaults
krb5 1.13.2 0 defaults
libdap4 3.18.3 2 conda-forge
libffi 3.2.1 1 defaults
libgcc 5.2.0 0 defaults
libgfortran 3.0.0 1 defaults
libiconv 1.14 0 defaults
libnetcdf 4.4.1 0 defaults
libpng 1.6.27 0 defaults
libpq 9.5.4 0 defaults
libsodium 1.0.10 0 defaults
libspatialindex 1.8.5 1 conda-forge
libspatialite 4.3.0a 14 conda-forge
libtiff 4.0.6 3 defaults
libxcb 1.12 1 defaults
libxml2 2.9.4 0 defaults
markupsafe 0.23 py36_2 defaults
matplotlib 2.0.2 np112py36_0 defaults
mistune 0.7.4 py36_0 defaults
mkl 2017.0.1 0 defaults
munch 2.1.0 py36_0 defaults
nbconvert 5.1.1 py36_0 defaults
nbformat 4.3.0 py36_0 defaults
ncurses 5.9 10 defaults
notebook 5.0.0 py36_0 defaults
numpy 1.12.1 py36_0 defaults
openjpeg 2.1.2 2 conda-forge
openssl 1.0.2k 2 defaults
packaging 16.8 py36_0 defaults
pandas 0.20.1 np112py36_0 defaults
pandoc 1.15.0.6 0 defaults
pandocfilters 1.4.1 py36_0 defaults
pango 1.40.3 1 defaults
path.py 10.3.1 py36_0 defaults
pcre 8.39 1 defaults
pexpect 4.2.1 py36_0 defaults
pickleshare 0.7.4 py36_0 defaults
pip 9.0.1 py36_1 defaults
pixman 0.34.0 0 defaults
proj4 4.9.3 3 conda-forge
prompt_toolkit 1.0.14 py36_0 defaults
psycopg2 2.7.1 py36_0 defaults
ptyprocess 0.5.1 py36_0 defaults
py4j 0.10.4 py36_0 conda-forge
pyasn1 0.2.3 py36_0 defaults
pycosat 0.6.2 py36_0 defaults
pycparser 2.17 py36_0 defaults
pygments 2.2.0 py36_0 defaults
pyopenssl 17.0.0 py36_0 defaults
pyparsing 2.1.4 py36_0 defaults
pyproj 1.9.5.1 py36_0 defaults
pyqt 5.6.0 py36_2 defaults
pysal 1.13.0 py36_0 defaults
pyspark 2.1.1 py36_0 conda-forge
python 3.6.1 2 defaults
python-dateutil 2.6.0 py36_0 defaults
pytz 2017.2 py36_0 defaults
pyyaml 3.12 py36_0 defaults
pyzmq 16.0.2 py36_0 defaults
qt 5.6.2 4 defaults
qtconsole 4.3.0 py36_0 defaults
readline 6.2 2 defaults
requests 2.14.2 py36_0 defaults
rtree 0.8.3 py36_0 conda-forge
ruamel_yaml 0.11.14 py36_1 defaults
scipy 0.19.0 np112py36_0 defaults
setuptools 27.2.0 py36_0 defaults
shapely 1.5.17 np112py36_2 conda-forge
simplegeneric 0.8.1 py36_1 defaults
sip 4.18 py36_0 defaults
six 1.10.0 py36_0 defaults
sqlalchemy 1.1.9 py36_0 defaults
sqlite 3.13.0 0 defaults
terminado 0.6 py36_0 defaults
testpath 0.3 py36_0 defaults
tk 8.5.18 0 defaults
tornado 4.5.1 py36_0 defaults
traitlets 4.3.2 py36_0 defaults
util-linux 2.21 0 defaults
wcwidth 0.1.7 py36_0 defaults
wheel 0.29.0 py36_0 defaults
widgetsnbextension 2.0.0 py36_0 defaults
xerces-c 3.1.4 0 defaults
xz 5.2.2 1 defaults
yaml 0.1.6 0 defaults
zeromq 4.1.5 0 defaults
zlib 1.2.8 3 defaults
-Thanks, zogg