Austin,
If you specify a php.ini file that can give you complete control over what is used by your application. It can even override the list of extensions.
If you don't want it to do that, like in your case where you just want to set a couple properties you have two options.
1.) Use a `.user.ini` file for your settings. [1]
2.) Copy the `php.ini` file from here (5.4 [2], 5.5 [3], 5.6 [4]). Edit the settings you need and include that in `.bp-config/php`.
The first option is a standard way through PHP to include or override settings. It works similar to `.htaccess` files with Apache HTTPD. You place the `.user.ini` file in the directory with your PHP app and PHP will apply those based on the rules defined at [1].
The second option works because you're starting with the base configuration file from the build pack. This includes some special keys, like [5], which are altered by the build pack at runtime. Leaving these keys in place will allow you to customize the settings without losing the automatic features of the build pack. Conversely, if you wanted complete control you would just need to remove those keys.
Dan