Possible bug report: Authentication failed

[Michele Pasin]

Hi, 

I've upgraded to v.3 yesterday and used pre-existing databases without any problem. 

Then today I've tried to add a new DB but when saving it the authentication windows kept popping up. Apparently the default 'admin'/'admin' log on details stopped working. 

Tried stardog-admin server stop but that returned an Authentication failed error message. 

After restarting my machine (mac OS 10.10.1) and trying to run  stardog-admin server start, I got this error message: 

[michele.pasin]@L4917:~>stardog-admin server start
Apr 24, 2015 2:05:41 PM org.quartz.impl.StdSchedulerFactory instantiate
INFO: Using default implementation for ThreadExecutor
Apr 24, 2015 2:05:41 PM org.quartz.core.SchedulerSignalerImpl <init>
INFO: Initialized Scheduler Signaller of type: class org.quartz.core.SchedulerSignalerImpl
Apr 24, 2015 2:05:41 PM org.quartz.core.QuartzScheduler <init>
INFO: Quartz Scheduler v.2.1.3 created.
Apr 24, 2015 2:05:41 PM org.quartz.simpl.RAMJobStore initialize
INFO: RAMJobStore initialized.
Apr 24, 2015 2:05:41 PM org.quartz.core.QuartzScheduler initialize
INFO: Scheduler meta-data: Quartz Scheduler (v2.1.3) '215a2a12-6091-4efb-84a5-9b66559fedbd' with instanceId 'NON_CLUSTERED'
  Scheduler class: 'org.quartz.core.QuartzScheduler' - running locally.
  NOT STARTED.
  Currently in standby mode.
  Number of jobs executed: 0
  Using thread pool 'org.quartz.simpl.SimpleThreadPool' - with 10 threads.
  Using job-store 'org.quartz.simpl.RAMJobStore' - which does not support persistence. and is not clustered.
Apr 24, 2015 2:05:41 PM org.quartz.impl.StdSchedulerFactory instantiate
INFO: Quartz scheduler '215a2a12-6091-4efb-84a5-9b66559fedbd' initialized from an externally provided properties instance.
Apr 24, 2015 2:05:41 PM org.quartz.impl.StdSchedulerFactory instantiate
INFO: Quartz scheduler version: 2.1.3
Apr 24, 2015 2:05:41 PM org.quartz.core.QuartzScheduler start
INFO: Scheduler 215a2a12-6091-4efb-84a5-9b66559fedbd_$_NON_CLUSTERED started.
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:43 PM com.complexible.stardog.security.impl.AbstractExistingSecurityResourcesLoader permissionsMap
WARNING: Ignoring permission for unrecognized subject: tag:stardog.com:2011-10-11:stardog:security:User-1ymiigxvce4vzea4zp5bsfbgj
Apr 24, 2015 2:05:44 PM com.complexible.stardog.index.AbstractIndexData updateInPlace
WARNING: Error updating index
com.complexible.stardog.index.IndexException: Inconsistent index size for PSO; expected=701, got= 702
at com.complexible.stardog.index.AbstractIndexData.verifySizes(AbstractIndexData.java:246)
at com.complexible.stardog.index.AbstractIndexData.updateInPlace(AbstractIndexData.java:311)
at com.complexible.stardog.index.AbstractIndexData.update(AbstractIndexData.java:255)
at com.complexible.stardog.index.SingletonIndexData.updateDirect(SingletonIndexData.java:98)
at com.complexible.stardog.index.SingletonIndexData.update(SingletonIndexData.java:93)
at com.complexible.stardog.index.IndexWriterDataMapImpl.applyChanges(IndexWriterDataMapImpl.java:217)
at com.complexible.stardog.index.IndexWriterImpl.prepare(IndexWriterImpl.java:185)
at com.complexible.stardog.index.IndexWriterImpl.commit(IndexWriterImpl.java:221)
at com.complexible.stardog.RdfSystemInfo.setLastVersionRun(RdfSystemInfo.java:197)
at com.complexible.stardog.StardogKernel.validateMaintenanceWindow(StardogKernel.java:539)
at com.complexible.stardog.StardogKernel.<init>(StardogKernel.java:371)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.google.inject.internal.DefaultConstructionProxyFactory$2.newInstance(DefaultConstructionProxyFactory.java:85)
at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)
at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)
at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.Scopes$1$1.get(Scopes.java:65)
at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:54)
at com.google.inject.internal.InjectorImpl$4$1.call(InjectorImpl.java:978)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1024)
at com.google.inject.internal.InjectorImpl$4.get(InjectorImpl.java:974)
at com.google.inject.internal.InjectorImpl.getInstance(InjectorImpl.java:1013)
at com.complexible.stardog.Stardog.initKernel(Stardog.java:198)
at com.complexible.stardog.Stardog.<init>(Stardog.java:193)
at com.complexible.stardog.Stardog.initialize(Stardog.java:262)
at com.complexible.stardog.Stardog.initialize(Stardog.java:253)
at com.complexible.stardog.Stardog.buildServer(Stardog.java:246)
at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:144)
at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:47)
at com.complexible.stardog.cli.CLIBase.execute(CLIBase.java:54)
at com.complexible.stardog.cli.admin.CLI.main(CLI.java:194)
Apr 24, 2015 2:05:44 PM com.complexible.stardog.Stardog initKernel
SEVERE: There was an error during kernel init
com.complexible.stardog.StardogException: com.complexible.common.rdf.model.StardogLongLiteral cannot be cast to org.openrdf.model.URI
at com.complexible.stardog.RdfSystemInfo.readInfos(RdfSystemInfo.java:337)
at com.complexible.stardog.RdfSystemInfo._read(RdfSystemInfo.java:305)
at com.complexible.stardog.AbstractSystemInfo.read(AbstractSystemInfo.java:60)
at com.complexible.stardog.StardogKernel.start(StardogKernel.java:1795)
at com.complexible.stardog.StardogKernel.initialize(StardogKernel.java:483)
at com.complexible.stardog.Stardog.initKernel(Stardog.java:198)
at com.complexible.stardog.Stardog.<init>(Stardog.java:193)
at com.complexible.stardog.Stardog.initialize(Stardog.java:262)
at com.complexible.stardog.Stardog.initialize(Stardog.java:253)
at com.complexible.stardog.Stardog.buildServer(Stardog.java:246)
at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:144)
at com.complexible.stardog.cli.impl.ServerStart.call(ServerStart.java:47)
at com.complexible.stardog.cli.CLIBase.execute(CLIBase.java:54)
at com.complexible.stardog.cli.admin.CLI.main(CLI.java:194)
Caused by: java.lang.ClassCastException: com.complexible.common.rdf.model.StardogLongLiteral cannot be cast to org.openrdf.model.URI
at com.complexible.stardog.index.dictionary.Mappings$QuadToStatement.apply(Mappings.java:101)
at com.complexible.stardog.index.dictionary.Mappings$QuadToStatement.apply(Mappings.java:89)
at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
at com.complexible.common.openrdf.model.Graphs.newContextGraph(Graphs.java:226)
at com.complexible.stardog.RdfSystemInfo.getCatalog(RdfSystemInfo.java:227)
at com.complexible.stardog.RdfSystemInfo.readInfos(RdfSystemInfo.java:322)
... 13 more

I've created a brand new STARDOG_HOME folder now and things seem to be working again (obviously I needed to recreate all my databases manually, but no big deal). 

I thought I'd report this incident in case others have similar problems.. 

Many thanks, 

mik

 

[Michael Grove]

On Fri, Apr 24, 2015 at 9:31 AM, Michele Pasin <michel...@gmail.com> wrote:

Hi, 

I've upgraded to v.3 yesterday and used pre-existing databases without any problem. 

Then today I've tried to add a new DB but when saving it the authentication windows kept popping up. Apparently the default 'admin'/'admin' log on details stopped working. 

Tried stardog-admin server stop but that returned an Authentication failed error message. 

Can you try to run `stardog-admin db repair system` on your installation that you are having problems with.

If that does not work, can you send us the system directory in your Stardog home?

Cheers,

Mike

 

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[Michele Pasin]

Wow thanks  - running 

stardog-admin db repair system

did the job! 

The DB I previously tried to create appeared with the label 'unavailable', but I was able to delete it from the command line by running stardog-admin db drop db-name 

Thanks again,

Mik