Error on loading large file

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terns...@gmail.com

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Jul 13, 2016, 9:37:01 AM7/13/16
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I received the following error when trying to load a relatively large (2GB) .nq file into an existing database...

"There was a fatal failure during preparation of 8caf3f8c-8b9c-4752-9258-66120395da10 There was an error recording the data in the log"

I'm figuring it's a memory/space allocation error but haven't been able to dig up additional information in re to debugging/fixing.

Thanks.


Michael Grove

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Jul 13, 2016, 9:47:30 AM7/13/16
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Can you provide the complete stardog.log?

Cheers,

Mike
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terns...@gmail.com

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Jul 13, 2016, 11:30:51 AM7/13/16
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The following is the result of doing something like this...  ./stardog data add <myDB> <2GB file>


ERROR 2016-07-12 22:18:08,357 [SPEC-Server-1-2] com.complexible.stardog.db.DatabaseConnectionImpl:commit(396): There was an error committing the transaction, all changes were rolled back successfully
com.complexible.tx.api.HeuristicRollbackException: There was a fatal failure during preparation of 8caf3f8c-8b9c-4752-9258-66120395da10 There was an error recording the data in the log
        at com.complexible.tx.api.impl.DefaultTransaction.runPreparePhase(DefaultTransaction.java:440) ~[stardog-4.0.5.jar:?]
        at com.complexible.tx.api.impl.DefaultTransaction.commit(DefaultTransaction.java:326) ~[stardog-4.0.5.jar:?]
        at com.complexible.stardog.db.DatabaseConnectionImpl.commit(DatabaseConnectionImpl.java:389) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.db.DatabaseImpl$DBConnectionWrapper.commit(DatabaseImpl.java:1375) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.db.DelegatingDatabaseConnection.commit(DelegatingDatabaseConnection.java:287) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.StardogKernel$KernelDbConnection.commit(StardogKernel.java:2739) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.db.DelegatingDatabaseConnection.commit(DelegatingDatabaseConnection.java:287) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.StardogKernel$NotifyingDatabaseConnection.commit(StardogKernel.java:3048) [stardog-4.0.5.jar:?]
        at com.complexible.stardog.protocols.server.SPECServerFunction.commitTx(SPECServerFunction.java:418) [stardog-protocols-spec-server-4.0.5.jar:?]
        at com.complexible.stardog.protocols.server.SPECServerFunction.handleMessage(SPECServerFunction.java:164) [stardog-protocols-spec-server-4.0.5.jar:?]
        at com.complexible.common.protocols.server.rpc.ServerHandler.handleMessage(ServerHandler.java:324) [stardog-protocols-api-server-4.0.5.jar:?]
        at com.complexible.common.protocols.server.rpc.ServerHandler.channelRead(ServerHandler.java:207) [stardog-protocols-api-server-4.0.5.jar:?]
        at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at io.netty.channel.AbstractChannelHandlerContext.access$600(AbstractChannelHandlerContext.java:32) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at io.netty.channel.AbstractChannelHandlerContext$7.run(AbstractChannelHandlerContext.java:299) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at io.netty.util.concurrent.DefaultEventExecutor.run(DefaultEventExecutor.java:36) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:112) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137) [netty-all-4.0.32.Final.jar:4.0.32.Final]
        at java.lang.Thread.run(Thread.java:745) [?:1.8.0_91]

Michael Grove

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Jul 13, 2016, 11:32:17 AM7/13/16
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Can you provide the complete stardog.log?

Also, you might consider upgrading to the most recent version, you're
a number of revisions behind.

Cheers,

Mike
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